Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP2AO43633 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP2AO43633 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP2AO43633 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP2AO43633 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP2AO43633 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC16.5■□□□□ 0.23
CHMP2AO43633 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
CHMP2AO43633 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP2AO43633 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP2AO43633 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CHMP2AO43633 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC16.5■□□□□ 0.23
CHMP2AO43633 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC16.5■□□□□ 0.23
CHMP2AO43633 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
CHMP2AO43633 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP2AO43633 AL157407.1-201ENST00000435784 904 ntBASIC16.5■□□□□ 0.23
CHMP2AO43633 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC16.5■□□□□ 0.23
CHMP2AO43633 AC012441.2-201ENST00000444843 739 ntBASIC16.5■□□□□ 0.23
CHMP2AO43633 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP2AO43633 AC022494.1-201ENST00000466044 728 ntBASIC16.5■□□□□ 0.23
CHMP2AO43633 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC16.5■□□□□ 0.23
CHMP2AO43633 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC16.5■□□□□ 0.23
CHMP2AO43633 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC16.5■□□□□ 0.23
CHMP2AO43633 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC16.5■□□□□ 0.23
CHMP2AO43633 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CHMP2AO43633 AC009884.2-201ENST00000603110 324 ntBASIC16.5■□□□□ 0.23
CHMP2AO43633 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP2AO43633 KHSRPP1-201ENST00000427983 1768 ntBASIC16.5■□□□□ 0.23
CHMP2AO43633 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP2AO43633 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
CHMP2AO43633 AC113367.3-201ENST00000508316 1912 ntBASIC16.5■□□□□ 0.23
CHMP2AO43633 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP2AO43633 AP001267.2-201ENST00000532619 2086 ntBASIC16.5■□□□□ 0.23
CHMP2AO43633 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC16.5■□□□□ 0.23
CHMP2AO43633 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP2AO43633 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC16.5■□□□□ 0.23
CHMP2AO43633 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC16.5■□□□□ 0.23
CHMP2AO43633 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CHMP2AO43633 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP2AO43633 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CHMP2AO43633 TMBIM7P-202ENST00000641474 1516 ntBASIC16.5■□□□□ 0.23
CHMP2AO43633 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP2AO43633 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP2AO43633 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC16.49■□□□□ 0.23
CHMP2AO43633 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP2AO43633 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP2AO43633 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC16.49■□□□□ 0.23
CHMP2AO43633 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC16.49■□□□□ 0.23
CHMP2AO43633 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
CHMP2AO43633 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP2AO43633 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC16.49■□□□□ 0.23
CHMP2AO43633 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP2AO43633 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC16.49■□□□□ 0.23
CHMP2AO43633 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP2AO43633 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP2AO43633 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP2AO43633 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC16.49■□□□□ 0.23
CHMP2AO43633 DPM3-202ENST00000368399 517 ntBASIC16.49■□□□□ 0.23
CHMP2AO43633 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP2AO43633 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP2AO43633 FNTAP2-201ENST00000430308 634 ntBASIC16.49■□□□□ 0.23
CHMP2AO43633 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC16.49■□□□□ 0.23
CHMP2AO43633 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC16.49■□□□□ 0.23
CHMP2AO43633 FAM58BP-201ENST00000439056 645 ntBASIC16.49■□□□□ 0.23
CHMP2AO43633 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC16.49■□□□□ 0.23
CHMP2AO43633 EIF4HP1-201ENST00000453115 687 ntBASIC16.49■□□□□ 0.23
CHMP2AO43633 ARTN-209ENST00000479128 471 ntTSL 3 BASIC16.49■□□□□ 0.23
CHMP2AO43633 AC091804.1-201ENST00000486888 567 ntBASIC16.49■□□□□ 0.23
CHMP2AO43633 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC16.49■□□□□ 0.23
CHMP2AO43633 SCARNA21-201ENST00000517026 139 ntBASIC16.49■□□□□ 0.23
CHMP2AO43633 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC16.49■□□□□ 0.23
CHMP2AO43633 RN7SL163P-201ENST00000583100 276 ntBASIC16.49■□□□□ 0.23
CHMP2AO43633 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC16.49■□□□□ 0.23
CHMP2AO43633 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC16.49■□□□□ 0.23
CHMP2AO43633 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC16.49■□□□□ 0.23
CHMP2AO43633 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP2AO43633 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC16.49■□□□□ 0.23
CHMP2AO43633 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP2AO43633 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP2AO43633 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP2AO43633 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP2AO43633 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CHMP2AO43633 AGGF1P1-201ENST00000509500 2073 ntBASIC16.49■□□□□ 0.23
CHMP2AO43633 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC16.49■□□□□ 0.23
CHMP2AO43633 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC16.49■□□□□ 0.23
CHMP2AO43633 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP2AO43633 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP2AO43633 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP2AO43633 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP2AO43633 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP2AO43633 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP2AO43633 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC16.48■□□□□ 0.23
CHMP2AO43633 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP2AO43633 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP2AO43633 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP2AO43633 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP2AO43633 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC16.48■□□□□ 0.23
CHMP2AO43633 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC16.48■□□□□ 0.23
CHMP2AO43633 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CHMP2AO43633 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
CHMP2AO43633 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms