Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 SAT1-201ENST00000379251 801 ntTSL 2 BASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 SAT1-202ENST00000379253 909 ntTSL 2 BASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 SAT1-203ENST00000379254 868 ntTSL 3 BASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 AC114812.1-201ENST00000421868 689 ntTSL 2 BASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 ST13P19-201ENST00000442505 1124 ntBASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 AC117945.1-201ENST00000451375 463 ntTSL 3 BASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 AC006529.1-201ENST00000459978 637 ntBASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 URB1-AS1-201ENST00000534991 831 ntBASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 F11R-204ENST00000537746 1245 ntTSL 2 BASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 AC007298.2-201ENST00000551849 862 ntTSL 3 BASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 COX5A-205ENST00000568517 582 ntTSL 3 BASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ZC3H4Q9UPT8 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
ZC3H4Q9UPT8 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
ZC3H4Q9UPT8 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
ZC3H4Q9UPT8 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
ZC3H4Q9UPT8 F10-203ENST00000409306 1450 ntTSL 3 BASIC17.52■□□□□ 0.39
ZC3H4Q9UPT8 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
ZC3H4Q9UPT8 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
ZC3H4Q9UPT8 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
ZC3H4Q9UPT8 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
ZC3H4Q9UPT8 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC17.52■□□□□ 0.39
ZC3H4Q9UPT8 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
ZC3H4Q9UPT8 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
ZC3H4Q9UPT8 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
ZC3H4Q9UPT8 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
ZC3H4Q9UPT8 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 ODF3L1-201ENST00000332145 1196 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 AC092612.1-201ENST00000514501 998 ntBASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ZC3H4Q9UPT8 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ZC3H4Q9UPT8 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ZC3H4Q9UPT8 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
ZC3H4Q9UPT8 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
ZC3H4Q9UPT8 AC092570.1-201ENST00000414446 469 ntBASIC17.5■□□□□ 0.39
ZC3H4Q9UPT8 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC17.5■□□□□ 0.39
ZC3H4Q9UPT8 KRT18P4-201ENST00000422599 1288 ntBASIC17.5■□□□□ 0.39
ZC3H4Q9UPT8 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
ZC3H4Q9UPT8 HIST1H2APS2-201ENST00000454426 370 ntBASIC17.5■□□□□ 0.39
ZC3H4Q9UPT8 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
ZC3H4Q9UPT8 RN7SL564P-201ENST00000496309 250 ntBASIC17.5■□□□□ 0.39
ZC3H4Q9UPT8 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC17.5■□□□□ 0.39
ZC3H4Q9UPT8 AP002353.1-201ENST00000528257 1599 ntBASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms