Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 LINC02048-201ENST00000440556 1771 ntTSL 5 BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC39Q9UFE4 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 GOLGA6L11P-201ENST00000417252 1298 ntBASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 AL355385.1-201ENST00000606123 409 ntBASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 HNRNPA1P48-201ENST00000562726 1377 ntBASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 AGER-206ENST00000375070 1463 ntTSL 5 BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 AC073548.1-201ENST00000624088 1882 ntBASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 WDR17-205ENST00000508596 4294 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
CCDC39Q9UFE4 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC39Q9UFE4 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC39Q9UFE4 ANKRD20A19P-202ENST00000442969 2796 ntTSL 2 BASIC17.08■□□□□ 0.33
CCDC39Q9UFE4 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC17.08■□□□□ 0.33
CCDC39Q9UFE4 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC39Q9UFE4 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CCDC39Q9UFE4 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 RPS15-201ENST00000233609 534 ntTSL 2 BASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 AC004945.1-201ENST00000416738 983 ntBASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 ELK1P1-201ENST00000485699 580 ntBASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 ENPP7P5-201ENST00000541031 1031 ntBASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 AC140912.1-201ENST00000577171 1054 ntBASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 RPS15-205ENST00000586686 562 ntTSL 5 BASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 RPS15-208ENST00000591804 711 ntTSL 5 BASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC17.08■□□□□ 0.32
CCDC39Q9UFE4 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CCDC39Q9UFE4 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 80.4 ms