Protein–RNA interactions for Protein: Q9BYV6

TRIM55, Tripartite motif-containing protein 55, humanhuman

Predictions only

Length 548 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55Q9BYV6 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 TMEM198B-204ENST00000484016 896 ntBASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 APOC4-201ENST00000591600 348 ntTSL 3 BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 AC099568.2-201ENST00000609194 695 ntBASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
TRIM55Q9BYV6 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 AC090505.1-201ENST00000430515 1834 ntBASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 AL512343.1-201ENST00000605837 169 ntBASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 AC093726.1-201ENST00000608064 963 ntBASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 WFDC1-204ENST00000613603 549 ntBASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC14.94□□□□□ -0.02
TRIM55Q9BYV6 DEK-201ENST00000244776 1441 ntTSL 2 BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 AC015818.8-201ENST00000587907 1519 ntBASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 PTK7-212ENST00000476760 902 ntTSL 2 BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 FADS2-205ENST00000517839 469 ntTSL 3 BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC14.93□□□□□ -0.02
TRIM55Q9BYV6 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC14.93□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms