Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 AC022447.6-201ENST00000515522 438 ntBASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 SORD2P-201ENST00000558556 1069 ntBASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 HPN-206ENST00000597419 1212 ntTSL 5 BASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 AC007718.1-201ENST00000621078 280 ntBASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
UBE3BQ7Z3V4 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 PRKXP1-201ENST00000561423 1122 ntBASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 AC026803.1-201ENST00000569130 274 ntBASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 AC007686.3-201ENST00000619017 3487 ntBASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
UBE3BQ7Z3V4 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 UFM1-202ENST00000379649 846 ntTSL 4 BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 STUB1-204ENST00000564370 875 ntTSL 2 BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 DRG2-220ENST00000583355 891 ntTSL 3 BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 MIR6769A-201ENST00000617340 73 ntBASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 AP002353.1-201ENST00000528257 1599 ntBASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 CAP2P1-201ENST00000557743 1390 ntBASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 COCH-203ENST00000460581 2688 ntTSL 2 BASIC18.16■□□□□ 0.5
UBE3BQ7Z3V4 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
UBE3BQ7Z3V4 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
UBE3BQ7Z3V4 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
UBE3BQ7Z3V4 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
UBE3BQ7Z3V4 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC18.15■□□□□ 0.5
UBE3BQ7Z3V4 AC092506.1-202ENST00000401022 528 ntBASIC18.15■□□□□ 0.5
UBE3BQ7Z3V4 GGCT-203ENST00000409144 836 ntTSL 2 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 136.8 ms