Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 NRP2-204ENST00000360409 6662 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 MYO16-205ENST00000457511 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 CCR7-201ENST00000246657 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 SLC4A7-203ENST00000425128 7970 ntTSL 5 BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 AC015802.1-201ENST00000588104 1449 ntBASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 KRT18P43-201ENST00000469825 1281 ntBASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 RN7SL618P-201ENST00000477850 296 ntBASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 ZNF767P-206ENST00000513792 565 ntBASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 AL079307.3-201ENST00000556114 283 ntBASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 AC093726.1-201ENST00000608064 963 ntBASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 WFDC1-204ENST00000613603 549 ntBASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 TNNI1-202ENST00000361379 5413 ntAPPRIS P2 TSL 5 BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 CNP-202ENST00000393892 5217 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
PDLIM3Q53GG5 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 PCDHGA3-201ENST00000253812 4771 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 SERBP1P3-201ENST00000459980 809 ntBASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 AP001889.1-201ENST00000525414 633 ntBASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 MIR4706-201ENST00000582134 82 ntBASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 AC025048.3-201ENST00000590609 569 ntBASIC12.31□□□□□ -0.44
PDLIM3Q53GG5 AC233724.13-201ENST00000598383 410 ntBASIC12.31□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms