Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 TMEM14B-215ENST00000481240 1032 ntTSL 2 BASIC14.99□□□□□ -0.01
CHD9Q3L8U1 C11orf45-202ENST00000524878 609 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
CHD9Q3L8U1 AP000640.1-201ENST00000525337 879 ntTSL 2 BASIC14.99□□□□□ -0.01
CHD9Q3L8U1 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
CHD9Q3L8U1 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 CLUAP1-201ENST00000341633 1643 ntTSL 5 BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 HNF4A-206ENST00000457232 1339 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 CBR3-AS1-202ENST00000427491 741 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 AL356000.1-201ENST00000441073 1238 ntBASIC14.98□□□□□ -0.01
CHD9Q3L8U1 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 C10orf91-203ENST00000490765 462 ntTSL 3 BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 AC011676.2-201ENST00000518520 584 ntTSL 2 BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 LAMTOR1-208ENST00000545249 965 ntTSL 3 BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 GLT8D2-204ENST00000547583 862 ntTSL 5 BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 AL157871.1-201ENST00000555428 429 ntTSL 3 BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 IRF3-213ENST00000596765 710 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 CSAG3-201ENST00000599845 844 ntAPPRIS P5 TSL 1 (best) BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 AC021321.1-201ENST00000607397 1113 ntBASIC14.98□□□□□ -0.01
CHD9Q3L8U1 CBR3-AS1-207ENST00000608641 777 ntTSL 5 BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 AC106782.5-201ENST00000616011 337 ntBASIC14.98□□□□□ -0.01
CHD9Q3L8U1 CSAG2-203ENST00000638741 844 ntAPPRIS P5 TSL 1 (best) BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 IL1F10-201ENST00000341010 1013 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 MYL4-202ENST00000393450 855 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 AC074050.2-201ENST00000563338 538 ntTSL 3 BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 ZNF571-AS1-204ENST00000587121 822 ntTSL 3 BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CHD9Q3L8U1 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC14.97□□□□□ -0.01
CHD9Q3L8U1 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC14.97□□□□□ -0.01
CHD9Q3L8U1 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC14.97□□□□□ -0.01
CHD9Q3L8U1 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
CHD9Q3L8U1 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CHD9Q3L8U1 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHD9Q3L8U1 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC14.97□□□□□ -0.01
CHD9Q3L8U1 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CHD9Q3L8U1 PEBP1P3-201ENST00000455475 548 ntBASIC14.97□□□□□ -0.01
CHD9Q3L8U1 RN7SL684P-201ENST00000465665 294 ntBASIC14.97□□□□□ -0.01
CHD9Q3L8U1 HNRNPA3P6-201ENST00000472163 1006 ntBASIC14.97□□□□□ -0.01
CHD9Q3L8U1 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC14.97□□□□□ -0.01
CHD9Q3L8U1 AC004923.3-201ENST00000527532 355 ntBASIC14.97□□□□□ -0.01
CHD9Q3L8U1 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC14.97□□□□□ -0.01
CHD9Q3L8U1 AP001462.1-201ENST00000594089 452 ntBASIC14.97□□□□□ -0.01
CHD9Q3L8U1 AC020922.4-201ENST00000621389 339 ntBASIC14.97□□□□□ -0.01
CHD9Q3L8U1 NCS1-203ENST00000630865 1092 ntTSL 3 BASIC14.97□□□□□ -0.01
CHD9Q3L8U1 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CHD9Q3L8U1 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHD9Q3L8U1 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC14.97□□□□□ -0.01
CHD9Q3L8U1 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
CHD9Q3L8U1 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC14.97□□□□□ -0.01
CHD9Q3L8U1 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC14.97□□□□□ -0.01
CHD9Q3L8U1 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC14.97□□□□□ -0.01
CHD9Q3L8U1 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC14.97□□□□□ -0.01
CHD9Q3L8U1 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHD9Q3L8U1 CPSF4L-202ENST00000397671 1275 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
CHD9Q3L8U1 ATP5J-204ENST00000400093 1179 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHD9Q3L8U1 CLDN25-201ENST00000453129 754 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
CHD9Q3L8U1 AP000920.1-201ENST00000531824 344 ntBASIC14.97□□□□□ -0.01
CHD9Q3L8U1 URB1-AS1-201ENST00000534991 831 ntBASIC14.97□□□□□ -0.01
CHD9Q3L8U1 CMC2-204ENST00000562713 573 ntTSL 3 BASIC14.97□□□□□ -0.01
CHD9Q3L8U1 CMC2-209ENST00000565108 399 ntTSL 2 BASIC14.97□□□□□ -0.01
CHD9Q3L8U1 AL591471.1-201ENST00000621855 229 ntBASIC14.97□□□□□ -0.01
CHD9Q3L8U1 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CHD9Q3L8U1 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHD9Q3L8U1 RPL13AP3-202ENST00000494676 1473 ntBASIC14.97□□□□□ -0.01
CHD9Q3L8U1 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC14.97□□□□□ -0.01
CHD9Q3L8U1 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC14.97□□□□□ -0.01
CHD9Q3L8U1 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
CHD9Q3L8U1 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 71.8 ms