Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 SLC6A6P1-201ENST00000413933 1850 ntBASIC16.54■□□□□ 0.24
TPM4P67936 MKL1-203ENST00000402042 4343 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TPM4P67936 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC16.54■□□□□ 0.24
TPM4P67936 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TPM4P67936 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC16.54■□□□□ 0.24
TPM4P67936 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TPM4P67936 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC16.54■□□□□ 0.24
TPM4P67936 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
TPM4P67936 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TPM4P67936 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC16.54■□□□□ 0.24
TPM4P67936 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TPM4P67936 AL139094.1-201ENST00000405549 1188 ntBASIC16.54■□□□□ 0.24
TPM4P67936 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC16.54■□□□□ 0.24
TPM4P67936 AC114501.2-201ENST00000439631 535 ntBASIC16.54■□□□□ 0.24
TPM4P67936 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TPM4P67936 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC16.54■□□□□ 0.24
TPM4P67936 RAB35-202ENST00000534951 939 ntTSL 2 BASIC16.54■□□□□ 0.24
TPM4P67936 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.54■□□□□ 0.24
TPM4P67936 DUX4L47-201ENST00000566374 394 ntBASIC16.54■□□□□ 0.24
TPM4P67936 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
TPM4P67936 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
TPM4P67936 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC16.54■□□□□ 0.24
TPM4P67936 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC16.54■□□□□ 0.24
TPM4P67936 AL049840.4-201ENST00000602422 811 ntBASIC16.54■□□□□ 0.24
TPM4P67936 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TPM4P67936 AL603764.1-201ENST00000636452 321 ntBASIC16.54■□□□□ 0.24
TPM4P67936 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC16.54■□□□□ 0.24
TPM4P67936 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TPM4P67936 RGS12-204ENST00000382788 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
TPM4P67936 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TPM4P67936 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
TPM4P67936 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC16.54■□□□□ 0.24
TPM4P67936 MYO7A-202ENST00000409709 7462 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TPM4P67936 FAM122B-202ENST00000343004 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
TPM4P67936 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC16.54■□□□□ 0.24
TPM4P67936 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
TPM4P67936 AC073548.1-201ENST00000624088 1882 ntBASIC16.54■□□□□ 0.24
TPM4P67936 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TPM4P67936 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
TPM4P67936 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC16.54■□□□□ 0.24
TPM4P67936 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TPM4P67936 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
TPM4P67936 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TPM4P67936 HADH-202ENST00000403312 1752 ntTSL 5 BASIC16.54■□□□□ 0.24
TPM4P67936 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
TPM4P67936 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC16.53■□□□□ 0.24
TPM4P67936 CETP-203ENST00000566128 1733 ntTSL 5 BASIC16.53■□□□□ 0.24
TPM4P67936 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
TPM4P67936 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TPM4P67936 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TPM4P67936 BAHD1-203ENST00000561234 4698 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TPM4P67936 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TPM4P67936 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
TPM4P67936 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC16.53■□□□□ 0.24
TPM4P67936 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
TPM4P67936 AC015688.4-201ENST00000580780 1647 ntBASIC16.53■□□□□ 0.24
TPM4P67936 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
TPM4P67936 KRT8P35-201ENST00000483942 1338 ntBASIC16.53■□□□□ 0.24
TPM4P67936 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TPM4P67936 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
TPM4P67936 GSN-209ENST00000449733 2702 ntTSL 2 BASIC16.53■□□□□ 0.24
TPM4P67936 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TPM4P67936 AL139400.1-201ENST00000366220 510 ntBASIC16.53■□□□□ 0.24
TPM4P67936 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.53■□□□□ 0.24
TPM4P67936 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC16.53■□□□□ 0.24
TPM4P67936 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
TPM4P67936 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC16.53■□□□□ 0.24
TPM4P67936 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC16.53■□□□□ 0.24
TPM4P67936 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.53■□□□□ 0.24
TPM4P67936 AC004945.1-201ENST00000416738 983 ntBASIC16.53■□□□□ 0.24
TPM4P67936 AC254562.1-201ENST00000417586 456 ntBASIC16.53■□□□□ 0.24
TPM4P67936 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TPM4P67936 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.53■□□□□ 0.24
TPM4P67936 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.53■□□□□ 0.24
TPM4P67936 FAM86LP-201ENST00000478302 853 ntBASIC16.53■□□□□ 0.24
TPM4P67936 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC16.53■□□□□ 0.24
TPM4P67936 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
TPM4P67936 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
TPM4P67936 AC092865.5-201ENST00000545435 363 ntBASIC16.53■□□□□ 0.24
TPM4P67936 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC16.53■□□□□ 0.24
TPM4P67936 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TPM4P67936 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TPM4P67936 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TPM4P67936 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TPM4P67936 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TPM4P67936 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
TPM4P67936 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC16.53■□□□□ 0.24
TPM4P67936 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TPM4P67936 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TPM4P67936 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC16.53■□□□□ 0.24
TPM4P67936 AC023794.5-201ENST00000564380 2157 ntBASIC16.53■□□□□ 0.24
TPM4P67936 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC16.53■□□□□ 0.24
TPM4P67936 DNAJC13-201ENST00000260818 7730 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TPM4P67936 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TPM4P67936 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
TPM4P67936 AC105206.1-202ENST00000314927 2368 ntBASIC16.52■□□□□ 0.24
TPM4P67936 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TPM4P67936 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TPM4P67936 BTRC-202ENST00000370187 6134 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
TPM4P67936 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms