Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 SPDYE11-202ENST00000450699 704 ntBASIC10.42□□□□□ -0.74
CKS1BP61024 EGFR-207ENST00000455089 3844 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC10.42□□□□□ -0.74
CKS1BP61024 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC10.42□□□□□ -0.74
CKS1BP61024 SPDYE9P-201ENST00000570642 692 ntBASIC10.42□□□□□ -0.74
CKS1BP61024 NAA38-207ENST00000576861 556 ntTSL 3 BASIC10.42□□□□□ -0.74
CKS1BP61024 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC10.42□□□□□ -0.74
CKS1BP61024 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC10.42□□□□□ -0.74
CKS1BP61024 SPDYE10P-202ENST00000612005 668 ntBASIC10.42□□□□□ -0.74
CKS1BP61024 SPDYE8P-202ENST00000612377 668 ntBASIC10.42□□□□□ -0.74
CKS1BP61024 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC10.42□□□□□ -0.74
CKS1BP61024 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 CCT7P1-201ENST00000406551 1611 ntBASIC10.42□□□□□ -0.74
CKS1BP61024 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 RAB42-201ENST00000373826 1950 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 SIX1-203ENST00000554986 1959 ntTSL 3 BASIC10.42□□□□□ -0.74
CKS1BP61024 SLC5A10-201ENST00000317977 4436 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 PCDHGA6-201ENST00000517434 4775 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 NPR2-201ENST00000342694 3686 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC10.42□□□□□ -0.74
CKS1BP61024 OPA3-201ENST00000263275 7828 ntAPPRIS P3 TSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 OS9-218ENST00000551035 2246 ntTSL 2 BASIC10.42□□□□□ -0.74
CKS1BP61024 NAV1-203ENST00000367302 9685 ntTSL 5 BASIC10.42□□□□□ -0.74
CKS1BP61024 CBLB-204ENST00000405772 3237 ntTSL 2 BASIC10.42□□□□□ -0.74
CKS1BP61024 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC10.42□□□□□ -0.74
CKS1BP61024 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC10.42□□□□□ -0.74
CKS1BP61024 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC10.42□□□□□ -0.74
CKS1BP61024 ATP11A-202ENST00000375645 8795 ntAPPRIS P2 TSL 5 BASIC10.42□□□□□ -0.74
CKS1BP61024 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 SFPQ-201ENST00000357214 3747 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 PLA2G6-202ENST00000335539 3060 ntTSL 5 BASIC10.42□□□□□ -0.74
CKS1BP61024 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC10.42□□□□□ -0.74
CKS1BP61024 CACNA2D2-205ENST00000429770 5304 ntAPPRIS ALT2 TSL 5 BASIC10.42□□□□□ -0.74
CKS1BP61024 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC10.42□□□□□ -0.74
CKS1BP61024 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.74
CKS1BP61024 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC10.41□□□□□ -0.74
CKS1BP61024 LINC00894-206ENST00000450989 2361 ntTSL 2 BASIC10.41□□□□□ -0.74
CKS1BP61024 EHD1-213ENST00000621096 3336 ntTSL 5 BASIC10.41□□□□□ -0.74
CKS1BP61024 EIF4G1-205ENST00000382330 5129 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 BCAS4-202ENST00000371608 6680 ntAPPRIS P3 TSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC10.41□□□□□ -0.74
CKS1BP61024 ZCCHC8-207ENST00000543897 5663 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 ZNF259P1-201ENST00000407656 1365 ntBASIC10.41□□□□□ -0.74
CKS1BP61024 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC10.41□□□□□ -0.74
CKS1BP61024 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC10.41□□□□□ -0.74
CKS1BP61024 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC10.41□□□□□ -0.74
CKS1BP61024 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC10.41□□□□□ -0.74
CKS1BP61024 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC10.41□□□□□ -0.74
CKS1BP61024 AOC2-202ENST00000452774 2572 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 FBLIM1-203ENST00000375771 3498 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 CAPN5-201ENST00000278559 4397 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 ATP7B-202ENST00000344297 5861 ntTSL 5 BASIC10.41□□□□□ -0.74
CKS1BP61024 PDXK-201ENST00000291565 7366 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 VWC2-201ENST00000340652 11299 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 PIP5K1A-204ENST00000409426 3737 ntAPPRIS ALT2 TSL 5 BASIC10.41□□□□□ -0.74
CKS1BP61024 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 RAP1GAP2-201ENST00000254695 6661 ntAPPRIS P4 TSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 SHANK2-203ENST00000409161 9208 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 XIRP1-201ENST00000340369 6460 ntAPPRIS P3 TSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 KCNMA1-265ENST00000639591 3888 ntAPPRIS ALT2 TSL 5 BASIC10.41□□□□□ -0.74
CKS1BP61024 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 CAD-201ENST00000264705 7265 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 AL355306.1-201ENST00000415580 579 ntBASIC10.41□□□□□ -0.74
CKS1BP61024 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC10.41□□□□□ -0.74
CKS1BP61024 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC10.41□□□□□ -0.74
CKS1BP61024 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC10.41□□□□□ -0.74
CKS1BP61024 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC10.41□□□□□ -0.74
CKS1BP61024 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 AC099522.2-201ENST00000607001 744 ntBASIC10.41□□□□□ -0.74
CKS1BP61024 LINC-PINT-208ENST00000451786 3505 ntTSL 2 BASIC10.41□□□□□ -0.74
CKS1BP61024 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 MBNL1-AS1-202ENST00000608395 6585 ntTSL 2 BASIC10.41□□□□□ -0.74
CKS1BP61024 VENTX-201ENST00000325980 2911 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 MAST4-202ENST00000403625 10711 ntAPPRIS ALT2 TSL 5 BASIC10.41□□□□□ -0.74
CKS1BP61024 IST1-203ENST00000378799 4843 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 ZNF606-201ENST00000341164 4248 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 ELN-209ENST00000380576 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 C16orf62-215ENST00000542263 3138 ntTSL 2 BASIC10.41□□□□□ -0.74
CKS1BP61024 DGCR2-206ENST00000545799 4484 ntTSL 5 BASIC10.41□□□□□ -0.74
CKS1BP61024 CACNA2D2-202ENST00000360963 5272 ntAPPRIS ALT2 TSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 AC022384.1-202ENST00000450534 2831 ntAPPRIS ALT2 TSL 2 BASIC10.41□□□□□ -0.74
CKS1BP61024 PIK3CD-202ENST00000377346 5203 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 SCAF8-203ENST00000417268 4944 ntTSL 2 BASIC10.41□□□□□ -0.74
CKS1BP61024 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 CDK5RAP2-201ENST00000349780 6228 ntAPPRIS P3 TSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 TJAP1-202ENST00000372444 2778 ntAPPRIS P1 TSL 5 BASIC10.41□□□□□ -0.74
CKS1BP61024 TJAP1-203ENST00000372445 2751 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 ELP4-203ENST00000395934 1961 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
CKS1BP61024 PLEKHM1P1-202ENST00000578036 4318 ntTSL 2 BASIC10.41□□□□□ -0.74
CKS1BP61024 P3H2-201ENST00000319332 3509 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms