Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLRN1P58418 CEP68-202ENST00000377990 5847 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLRN1P58418 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLRN1P58418 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CLRN1P58418 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CLRN1P58418 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CLRN1P58418 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLRN1P58418 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CLRN1P58418 AP000593.2-201ENST00000542775 1433 ntBASIC13.17□□□□□ -0.3
CLRN1P58418 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
CLRN1P58418 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
CLRN1P58418 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC13.17□□□□□ -0.3
CLRN1P58418 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLRN1P58418 GRAP-202ENST00000395635 834 ntTSL 2 BASIC13.17□□□□□ -0.3
CLRN1P58418 RN7SKP175-201ENST00000408472 289 ntBASIC13.17□□□□□ -0.3
CLRN1P58418 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLRN1P58418 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC13.17□□□□□ -0.3
CLRN1P58418 COX20P2-201ENST00000452636 358 ntBASIC13.17□□□□□ -0.3
CLRN1P58418 MYADML-201ENST00000474610 2147 ntBASIC13.17□□□□□ -0.3
CLRN1P58418 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CLRN1P58418 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC13.17□□□□□ -0.3
CLRN1P58418 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CLRN1P58418 AC106820.3-201ENST00000561653 397 ntBASIC13.17□□□□□ -0.3
CLRN1P58418 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC13.17□□□□□ -0.3
CLRN1P58418 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC13.17□□□□□ -0.3
CLRN1P58418 AC244669.2-201ENST00000612320 853 ntBASIC13.17□□□□□ -0.3
CLRN1P58418 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC13.17□□□□□ -0.3
CLRN1P58418 AC105233.6-201ENST00000642093 218 ntBASIC13.17□□□□□ -0.3
CLRN1P58418 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC13.17□□□□□ -0.3
CLRN1P58418 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CLRN1P58418 CACNA1G-230ENST00000514717 6699 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLRN1P58418 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC13.17□□□□□ -0.3
CLRN1P58418 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC13.17□□□□□ -0.3
CLRN1P58418 CDK12-201ENST00000430627 5918 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLRN1P58418 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLRN1P58418 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLRN1P58418 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
CLRN1P58418 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
CLRN1P58418 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
CLRN1P58418 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
CLRN1P58418 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CLRN1P58418 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC13.16□□□□□ -0.3
CLRN1P58418 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
CLRN1P58418 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CLRN1P58418 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
CLRN1P58418 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
CLRN1P58418 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC13.16□□□□□ -0.3
CLRN1P58418 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC13.16□□□□□ -0.3
CLRN1P58418 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
CLRN1P58418 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC13.16□□□□□ -0.3
CLRN1P58418 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
CLRN1P58418 GPC6-201ENST00000377047 6467 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CLRN1P58418 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
CLRN1P58418 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC13.16□□□□□ -0.3
CLRN1P58418 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CLRN1P58418 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CLRN1P58418 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CLRN1P58418 LBX2-201ENST00000341396 886 ntTSL 3 BASIC13.16□□□□□ -0.3
CLRN1P58418 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC13.16□□□□□ -0.3
CLRN1P58418 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC13.16□□□□□ -0.3
CLRN1P58418 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
CLRN1P58418 AL035633.1-201ENST00000406139 838 ntBASIC13.16□□□□□ -0.3
CLRN1P58418 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC13.16□□□□□ -0.3
CLRN1P58418 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC13.16□□□□□ -0.3
CLRN1P58418 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
CLRN1P58418 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CLRN1P58418 CDC23-208ENST00000505120 455 ntTSL 3 BASIC13.16□□□□□ -0.3
CLRN1P58418 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC13.16□□□□□ -0.3
CLRN1P58418 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC13.16□□□□□ -0.3
CLRN1P58418 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC13.16□□□□□ -0.3
CLRN1P58418 ABR-228ENST00000574437 3196 ntTSL 5 BASIC13.16□□□□□ -0.3
CLRN1P58418 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CLRN1P58418 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
CLRN1P58418 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CLRN1P58418 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CLRN1P58418 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CLRN1P58418 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC13.16□□□□□ -0.3
CLRN1P58418 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC13.16□□□□□ -0.3
CLRN1P58418 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CLRN1P58418 MIR193BHG-211ENST00000641433 5365 ntBASIC13.16□□□□□ -0.3
CLRN1P58418 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CLRN1P58418 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
CLRN1P58418 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC13.16□□□□□ -0.3
CLRN1P58418 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CLRN1P58418 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CLRN1P58418 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLRN1P58418 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
CLRN1P58418 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CLRN1P58418 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC13.15□□□□□ -0.3
CLRN1P58418 TET3-201ENST00000305799 5174 ntTSL 5 BASIC13.15□□□□□ -0.3
CLRN1P58418 TKT-201ENST00000296289 1931 ntTSL 5 BASIC13.15□□□□□ -0.3
CLRN1P58418 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
CLRN1P58418 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC13.15□□□□□ -0.3
CLRN1P58418 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLRN1P58418 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
CLRN1P58418 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
CLRN1P58418 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CLRN1P58418 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
CLRN1P58418 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CLRN1P58418 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms