Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH6P55285 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CDH6P55285 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH6P55285 AL590440.2-201ENST00000641973 1595 ntBASIC15.32■□□□□ 0.04
CDH6P55285 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH6P55285 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC15.32■□□□□ 0.04
CDH6P55285 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CDH6P55285 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CDH6P55285 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC15.31■□□□□ 0.04
CDH6P55285 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
CDH6P55285 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH6P55285 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH6P55285 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH6P55285 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH6P55285 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC15.31■□□□□ 0.04
CDH6P55285 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH6P55285 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH6P55285 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH6P55285 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH6P55285 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC15.31■□□□□ 0.04
CDH6P55285 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH6P55285 SNX21-203ENST00000372541 771 ntTSL 2 BASIC15.31■□□□□ 0.04
CDH6P55285 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
CDH6P55285 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CDH6P55285 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH6P55285 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC15.31■□□□□ 0.04
CDH6P55285 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC15.31■□□□□ 0.04
CDH6P55285 COX5BP1-201ENST00000507622 393 ntBASIC15.31■□□□□ 0.04
CDH6P55285 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC15.31■□□□□ 0.04
CDH6P55285 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH6P55285 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC15.31■□□□□ 0.04
CDH6P55285 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CDH6P55285 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC15.31■□□□□ 0.04
CDH6P55285 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH6P55285 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH6P55285 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CDH6P55285 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
CDH6P55285 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH6P55285 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH6P55285 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH6P55285 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH6P55285 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH6P55285 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH6P55285 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC15.31■□□□□ 0.04
CDH6P55285 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CDH6P55285 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CDH6P55285 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CDH6P55285 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH6P55285 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CDH6P55285 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CDH6P55285 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH6P55285 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH6P55285 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CDH6P55285 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH6P55285 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH6P55285 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC15.3■□□□□ 0.04
CDH6P55285 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH6P55285 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CDH6P55285 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH6P55285 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC15.3■□□□□ 0.04
CDH6P55285 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CDH6P55285 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH6P55285 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CDH6P55285 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
CDH6P55285 HIST1H2BPS3-201ENST00000419683 341 ntBASIC15.3■□□□□ 0.04
CDH6P55285 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
CDH6P55285 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH6P55285 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC15.3■□□□□ 0.04
CDH6P55285 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CDH6P55285 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC15.3■□□□□ 0.04
CDH6P55285 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CDH6P55285 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CDH6P55285 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC15.3■□□□□ 0.04
CDH6P55285 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC15.3■□□□□ 0.04
CDH6P55285 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC15.3■□□□□ 0.04
CDH6P55285 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
CDH6P55285 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC15.3■□□□□ 0.04
CDH6P55285 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC15.3■□□□□ 0.04
CDH6P55285 RN7SL713P-201ENST00000582127 302 ntBASIC15.3■□□□□ 0.04
CDH6P55285 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC15.3■□□□□ 0.04
CDH6P55285 AC073413.1-201ENST00000603927 732 ntBASIC15.3■□□□□ 0.04
CDH6P55285 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC15.3■□□□□ 0.04
CDH6P55285 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.3■□□□□ 0.04
CDH6P55285 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
CDH6P55285 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CDH6P55285 AL035252.4-201ENST00000624174 288 ntBASIC15.3■□□□□ 0.04
CDH6P55285 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC15.3■□□□□ 0.04
CDH6P55285 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
CDH6P55285 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC15.3■□□□□ 0.04
CDH6P55285 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC15.3■□□□□ 0.04
CDH6P55285 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CDH6P55285 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC15.3■□□□□ 0.04
CDH6P55285 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
CDH6P55285 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC15.29■□□□□ 0.04
CDH6P55285 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
CDH6P55285 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH6P55285 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC15.29■□□□□ 0.04
CDH6P55285 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CDH6P55285 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CDH6P55285 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms