Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CXCL12P48061 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CXCL12P48061 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CXCL12P48061 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CXCL12P48061 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CXCL12P48061 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CXCL12P48061 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CXCL12P48061 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC14.4□□□□□ -0.1
CXCL12P48061 AC006987.1-201ENST00000413610 527 ntBASIC14.4□□□□□ -0.1
CXCL12P48061 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CXCL12P48061 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC14.4□□□□□ -0.1
CXCL12P48061 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC14.4□□□□□ -0.1
CXCL12P48061 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC14.4□□□□□ -0.1
CXCL12P48061 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC14.4□□□□□ -0.1
CXCL12P48061 RN7SL564P-201ENST00000496309 250 ntBASIC14.4□□□□□ -0.1
CXCL12P48061 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC14.4□□□□□ -0.1
CXCL12P48061 TREHP1-201ENST00000531328 465 ntBASIC14.4□□□□□ -0.1
CXCL12P48061 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CXCL12P48061 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC14.4□□□□□ -0.1
CXCL12P48061 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC14.4□□□□□ -0.1
CXCL12P48061 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CXCL12P48061 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC14.4□□□□□ -0.1
CXCL12P48061 AL139339.2-201ENST00000608063 657 ntBASIC14.4□□□□□ -0.1
CXCL12P48061 HELLS-212ENST00000630929 400 ntTSL 5 BASIC14.4□□□□□ -0.1
CXCL12P48061 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC14.4□□□□□ -0.1
CXCL12P48061 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC14.4□□□□□ -0.1
CXCL12P48061 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CXCL12P48061 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CXCL12P48061 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CXCL12P48061 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CXCL12P48061 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CXCL12P48061 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC14.4□□□□□ -0.1
CXCL12P48061 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CXCL12P48061 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC14.4□□□□□ -0.1
CXCL12P48061 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.4□□□□□ -0.1
CXCL12P48061 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
CXCL12P48061 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CXCL12P48061 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
CXCL12P48061 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CXCL12P48061 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CXCL12P48061 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CXCL12P48061 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CXCL12P48061 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CXCL12P48061 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CXCL12P48061 LTB4R2-202ENST00000528054 3092 ntBASIC14.39□□□□□ -0.11
CXCL12P48061 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
CXCL12P48061 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CXCL12P48061 AL365203.3-201ENST00000609742 2057 ntBASIC14.39□□□□□ -0.11
CXCL12P48061 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CXCL12P48061 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CXCL12P48061 MIR566-201ENST00000385187 94 ntBASIC14.39□□□□□ -0.11
CXCL12P48061 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC14.39□□□□□ -0.11
CXCL12P48061 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
CXCL12P48061 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC14.39□□□□□ -0.11
CXCL12P48061 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC14.39□□□□□ -0.11
CXCL12P48061 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CXCL12P48061 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC14.39□□□□□ -0.11
CXCL12P48061 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC14.39□□□□□ -0.11
CXCL12P48061 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
CXCL12P48061 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC14.39□□□□□ -0.11
CXCL12P48061 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC14.39□□□□□ -0.11
CXCL12P48061 AC145285.5-201ENST00000562217 361 ntBASIC14.39□□□□□ -0.11
CXCL12P48061 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC14.39□□□□□ -0.11
CXCL12P48061 AL021707.6-201ENST00000609212 491 ntBASIC14.39□□□□□ -0.11
CXCL12P48061 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC14.39□□□□□ -0.11
CXCL12P48061 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CXCL12P48061 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
CXCL12P48061 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CXCL12P48061 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CXCL12P48061 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CXCL12P48061 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC14.39□□□□□ -0.11
CXCL12P48061 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CXCL12P48061 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CXCL12P48061 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CXCL12P48061 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
CXCL12P48061 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
CXCL12P48061 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CXCL12P48061 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CXCL12P48061 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC14.39□□□□□ -0.11
CXCL12P48061 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC14.39□□□□□ -0.11
CXCL12P48061 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CXCL12P48061 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL12P48061 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC14.38□□□□□ -0.11
CXCL12P48061 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL12P48061 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL12P48061 LAP3P2-201ENST00000454686 1454 ntBASIC14.38□□□□□ -0.11
CXCL12P48061 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL12P48061 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL12P48061 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL12P48061 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL12P48061 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL12P48061 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
CXCL12P48061 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC14.38□□□□□ -0.11
CXCL12P48061 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC14.38□□□□□ -0.11
CXCL12P48061 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL12P48061 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL12P48061 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL12P48061 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CXCL12P48061 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC14.38□□□□□ -0.11
CXCL12P48061 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms