Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CIITAP33076 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
CIITAP33076 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CIITAP33076 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CIITAP33076 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CIITAP33076 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC16.44■□□□□ 0.22
CIITAP33076 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CIITAP33076 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CIITAP33076 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CIITAP33076 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC16.43■□□□□ 0.22
CIITAP33076 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CIITAP33076 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CIITAP33076 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CIITAP33076 BX640514.1-201ENST00000583223 1918 ntBASIC16.43■□□□□ 0.22
CIITAP33076 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CIITAP33076 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CIITAP33076 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
CIITAP33076 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CIITAP33076 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
CIITAP33076 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CIITAP33076 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CIITAP33076 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
CIITAP33076 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CIITAP33076 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CIITAP33076 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CIITAP33076 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CIITAP33076 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC16.43■□□□□ 0.22
CIITAP33076 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CIITAP33076 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC16.43■□□□□ 0.22
CIITAP33076 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CIITAP33076 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
CIITAP33076 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC16.43■□□□□ 0.22
CIITAP33076 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CIITAP33076 DEF8-202ENST00000418391 852 ntTSL 2 BASIC16.43■□□□□ 0.22
CIITAP33076 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC16.43■□□□□ 0.22
CIITAP33076 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC16.43■□□□□ 0.22
CIITAP33076 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC16.43■□□□□ 0.22
CIITAP33076 ACTG1P17-201ENST00000558391 1119 ntBASIC16.43■□□□□ 0.22
CIITAP33076 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC16.43■□□□□ 0.22
CIITAP33076 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CIITAP33076 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC16.43■□□□□ 0.22
CIITAP33076 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC16.43■□□□□ 0.22
CIITAP33076 FAM45BP-202ENST00000592932 1624 ntBASIC16.43■□□□□ 0.22
CIITAP33076 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CIITAP33076 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CIITAP33076 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CIITAP33076 ADK-205ENST00000539909 1866 ntTSL 2 BASIC16.43■□□□□ 0.22
CIITAP33076 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CIITAP33076 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CIITAP33076 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CIITAP33076 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
CIITAP33076 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC16.43■□□□□ 0.22
CIITAP33076 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC16.43■□□□□ 0.22
CIITAP33076 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CIITAP33076 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
CIITAP33076 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
CIITAP33076 RAN-210ENST00000541630 1475 ntTSL 2 BASIC16.42■□□□□ 0.22
CIITAP33076 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC16.42■□□□□ 0.22
CIITAP33076 HPD-204ENST00000543163 1709 ntTSL 5 BASIC16.42■□□□□ 0.22
CIITAP33076 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CIITAP33076 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CIITAP33076 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CIITAP33076 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CIITAP33076 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC16.42■□□□□ 0.22
CIITAP33076 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
CIITAP33076 INTS4P1-203ENST00000641008 3683 ntBASIC16.42■□□□□ 0.22
CIITAP33076 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
CIITAP33076 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC16.42■□□□□ 0.22
CIITAP33076 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CIITAP33076 HNRNPA1P41-201ENST00000397777 928 ntBASIC16.42■□□□□ 0.22
CIITAP33076 CYP46A4P-201ENST00000414953 267 ntBASIC16.42■□□□□ 0.22
CIITAP33076 KRTAP19-9P-201ENST00000421795 191 ntBASIC16.42■□□□□ 0.22
CIITAP33076 AC005077.2-201ENST00000449786 690 ntBASIC16.42■□□□□ 0.22
CIITAP33076 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC16.42■□□□□ 0.22
CIITAP33076 ADM-202ENST00000524948 584 ntTSL 2 BASIC16.42■□□□□ 0.22
CIITAP33076 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC16.42■□□□□ 0.22
CIITAP33076 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC16.42■□□□□ 0.22
CIITAP33076 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CIITAP33076 RERG-205ENST00000537647 935 ntTSL 2 BASIC16.42■□□□□ 0.22
CIITAP33076 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CIITAP33076 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CIITAP33076 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
CIITAP33076 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
CIITAP33076 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CIITAP33076 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CIITAP33076 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
CIITAP33076 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC16.42■□□□□ 0.22
CIITAP33076 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CIITAP33076 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
CIITAP33076 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CIITAP33076 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC16.42■□□□□ 0.22
CIITAP33076 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CIITAP33076 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CIITAP33076 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CIITAP33076 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
CIITAP33076 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
CIITAP33076 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CIITAP33076 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CIITAP33076 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CIITAP33076 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms