Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.64■□□□□ 0.57
RXRBP28702 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RXRBP28702 FAM189A2-202ENST00000303068 2051 ntTSL 2 BASIC18.64■□□□□ 0.57
RXRBP28702 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RXRBP28702 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RXRBP28702 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RXRBP28702 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC18.63■□□□□ 0.57
RXRBP28702 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
RXRBP28702 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RXRBP28702 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
RXRBP28702 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RXRBP28702 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RXRBP28702 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC18.63■□□□□ 0.57
RXRBP28702 STK33-217ENST00000534493 1895 ntTSL 2 BASIC18.63■□□□□ 0.57
RXRBP28702 SPTLC1P3-201ENST00000403408 259 ntBASIC18.63■□□□□ 0.57
RXRBP28702 INMT-202ENST00000409539 803 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RXRBP28702 AC010086.2-201ENST00000428616 226 ntBASIC18.63■□□□□ 0.57
RXRBP28702 AP002856.3-201ENST00000441665 635 ntTSL 3 BASIC18.63■□□□□ 0.57
RXRBP28702 VDAC1P11-201ENST00000458323 852 ntBASIC18.63■□□□□ 0.57
RXRBP28702 GIMAP6-202ENST00000493969 876 ntTSL 2 BASIC18.63■□□□□ 0.57
RXRBP28702 AC079340.2-201ENST00000504957 495 ntTSL 2 BASIC18.63■□□□□ 0.57
RXRBP28702 TCL1A-209ENST00000557043 980 ntTSL 3 BASIC18.63■□□□□ 0.57
RXRBP28702 MIR4459-201ENST00000581837 66 ntBASIC18.63■□□□□ 0.57
RXRBP28702 ZNF571-AS1-204ENST00000587121 822 ntTSL 3 BASIC18.63■□□□□ 0.57
RXRBP28702 RPS5-205ENST00000598495 800 ntTSL 3 BASIC18.63■□□□□ 0.57
RXRBP28702 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RXRBP28702 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RXRBP28702 DEDD-202ENST00000368006 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RXRBP28702 OASL-202ENST00000339275 1492 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RXRBP28702 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RXRBP28702 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RXRBP28702 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RXRBP28702 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC18.63■□□□□ 0.57
RXRBP28702 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RXRBP28702 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.62■□□□□ 0.57
RXRBP28702 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RXRBP28702 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.62■□□□□ 0.57
RXRBP28702 LXN-201ENST00000264265 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RXRBP28702 S100A7A-202ENST00000368728 440 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
RXRBP28702 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RXRBP28702 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
RXRBP28702 AC090696.1-201ENST00000419100 418 ntTSL 3 BASIC18.62■□□□□ 0.57
RXRBP28702 CIDEC-204ENST00000430427 877 ntTSL 3 BASIC18.62■□□□□ 0.57
RXRBP28702 Z69733.1-201ENST00000445990 632 ntTSL 3 BASIC18.62■□□□□ 0.57
RXRBP28702 OR52X1P-201ENST00000446117 914 ntBASIC18.62■□□□□ 0.57
RXRBP28702 AC025419.1-201ENST00000537250 690 ntTSL 3 BASIC18.62■□□□□ 0.57
RXRBP28702 KRT127P-201ENST00000547183 433 ntBASIC18.62■□□□□ 0.57
RXRBP28702 SNX20-205ENST00000610485 557 ntTSL 5 BASIC18.62■□□□□ 0.57
RXRBP28702 MIR6165-201ENST00000614803 84 ntBASIC18.62■□□□□ 0.57
RXRBP28702 MEP1AP1-201ENST00000636082 1097 ntBASIC18.62■□□□□ 0.57
RXRBP28702 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RXRBP28702 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
RXRBP28702 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC18.62■□□□□ 0.57
RXRBP28702 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
RXRBP28702 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RXRBP28702 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC18.62■□□□□ 0.57
RXRBP28702 PCDHGB8P-201ENST00000502926 1973 ntBASIC18.62■□□□□ 0.57
RXRBP28702 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RXRBP28702 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RXRBP28702 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RXRBP28702 AC006504.5-208ENST00000588784 2401 ntBASIC18.62■□□□□ 0.57
RXRBP28702 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
RXRBP28702 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC18.62■□□□□ 0.57
RXRBP28702 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RXRBP28702 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
RXRBP28702 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC18.61■□□□□ 0.57
RXRBP28702 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RXRBP28702 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
RXRBP28702 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC18.61■□□□□ 0.57
RXRBP28702 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
RXRBP28702 LGALS4-201ENST00000307751 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RXRBP28702 AC124944.3-201ENST00000607976 1304 ntBASIC18.61■□□□□ 0.57
RXRBP28702 RNF181-201ENST00000306368 569 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
RXRBP28702 TEX38-201ENST00000334122 866 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RXRBP28702 POP5-201ENST00000341039 913 ntTSL 2 BASIC18.61■□□□□ 0.57
RXRBP28702 AC068631.1-228ENST00000354642 742 ntTSL 5 BASIC18.61■□□□□ 0.57
RXRBP28702 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RXRBP28702 KRTAP1-5-201ENST00000361883 1177 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
RXRBP28702 ZNF684-201ENST00000372696 1009 ntTSL 3 BASIC18.61■□□□□ 0.57
RXRBP28702 IGFL4-201ENST00000377697 573 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
RXRBP28702 FUNDC1-201ENST00000378045 1196 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RXRBP28702 NME2-201ENST00000393183 568 ntTSL 2 BASIC18.61■□□□□ 0.57
RXRBP28702 PHBP10-201ENST00000416467 784 ntBASIC18.61■□□□□ 0.57
RXRBP28702 AC074019.1-201ENST00000428788 1096 ntBASIC18.61■□□□□ 0.57
RXRBP28702 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC18.61■□□□□ 0.57
RXRBP28702 AC006059.1-201ENST00000438017 722 ntTSL 5 BASIC18.61■□□□□ 0.57
RXRBP28702 AC112250.1-201ENST00000504640 745 ntBASIC18.61■□□□□ 0.57
RXRBP28702 C3orf84-203ENST00000545770 706 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
RXRBP28702 MT1X-202ENST00000562939 538 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RXRBP28702 AC026461.1-201ENST00000567563 551 ntTSL 4 BASIC18.61■□□□□ 0.57
RXRBP28702 AC137936.2-202ENST00000638124 1146 ntTSL 5 BASIC18.61■□□□□ 0.57
RXRBP28702 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
RXRBP28702 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.61■□□□□ 0.57
RXRBP28702 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
RXRBP28702 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RXRBP28702 CMIP-202ENST00000537098 4357 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RXRBP28702 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC18.61■□□□□ 0.57
RXRBP28702 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RXRBP28702 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
RXRBP28702 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms