Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 RET-205ENST00000615310 4337 ntTSL 5 BASIC11.28□□□□□ -0.6
HLA-DMBP28068 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC11.28□□□□□ -0.6
HLA-DMBP28068 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DMBP28068 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
HLA-DMBP28068 AL136172.1-201ENST00000598590 1394 ntBASIC11.28□□□□□ -0.6
HLA-DMBP28068 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
HLA-DMBP28068 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC11.27□□□□□ -0.6
HLA-DMBP28068 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.6
HLA-DMBP28068 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC11.27□□□□□ -0.6
HLA-DMBP28068 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
HLA-DMBP28068 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
HLA-DMBP28068 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.6
HLA-DMBP28068 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.6
HLA-DMBP28068 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
HLA-DMBP28068 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC11.27□□□□□ -0.6
HLA-DMBP28068 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.6
HLA-DMBP28068 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC11.27□□□□□ -0.6
HLA-DMBP28068 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
HLA-DMBP28068 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
HLA-DMBP28068 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.6
HLA-DMBP28068 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC11.27□□□□□ -0.6
HLA-DMBP28068 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
HLA-DMBP28068 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC11.27□□□□□ -0.61
HLA-DMBP28068 AC016397.2-201ENST00000624848 1985 ntBASIC11.27□□□□□ -0.61
HLA-DMBP28068 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DMBP28068 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DMBP28068 GSN-209ENST00000449733 2702 ntTSL 2 BASIC11.27□□□□□ -0.61
HLA-DMBP28068 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DMBP28068 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DMBP28068 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DMBP28068 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DMBP28068 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC11.27□□□□□ -0.61
HLA-DMBP28068 RPS15-201ENST00000233609 534 ntTSL 2 BASIC11.27□□□□□ -0.61
HLA-DMBP28068 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DMBP28068 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DMBP28068 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DMBP28068 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.61
HLA-DMBP28068 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DMBP28068 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC11.27□□□□□ -0.61
HLA-DMBP28068 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC11.27□□□□□ -0.61
HLA-DMBP28068 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DMBP28068 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC11.27□□□□□ -0.61
HLA-DMBP28068 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC11.27□□□□□ -0.61
HLA-DMBP28068 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
HLA-DMBP28068 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.61
HLA-DMBP28068 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC11.27□□□□□ -0.61
HLA-DMBP28068 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC11.27□□□□□ -0.61
HLA-DMBP28068 WASH4P-201ENST00000564273 1246 ntBASIC11.27□□□□□ -0.61
HLA-DMBP28068 RPS15-205ENST00000586686 562 ntTSL 5 BASIC11.27□□□□□ -0.61
HLA-DMBP28068 RPS15-208ENST00000591804 711 ntTSL 5 BASIC11.27□□□□□ -0.61
HLA-DMBP28068 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DMBP28068 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DMBP28068 AC099568.2-201ENST00000609194 695 ntBASIC11.27□□□□□ -0.61
HLA-DMBP28068 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DMBP28068 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DMBP28068 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC11.27□□□□□ -0.61
HLA-DMBP28068 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC11.27□□□□□ -0.61
HLA-DMBP28068 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DMBP28068 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
HLA-DMBP28068 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DMBP28068 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DMBP28068 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC11.27□□□□□ -0.61
HLA-DMBP28068 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DMBP28068 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DMBP28068 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.61
HLA-DMBP28068 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DMBP28068 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC11.27□□□□□ -0.61
HLA-DMBP28068 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DMBP28068 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DMBP28068 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.61
HLA-DMBP28068 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DMBP28068 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC11.27□□□□□ -0.61
HLA-DMBP28068 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC11.27□□□□□ -0.61
HLA-DMBP28068 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DMBP28068 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DMBP28068 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
HLA-DMBP28068 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DMBP28068 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DMBP28068 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC11.26□□□□□ -0.61
HLA-DMBP28068 TET3-201ENST00000305799 5174 ntTSL 5 BASIC11.26□□□□□ -0.61
HLA-DMBP28068 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC11.26□□□□□ -0.61
HLA-DMBP28068 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
HLA-DMBP28068 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DMBP28068 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
HLA-DMBP28068 AC003102.2-201ENST00000589195 1469 ntBASIC11.26□□□□□ -0.61
HLA-DMBP28068 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DMBP28068 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DMBP28068 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC11.26□□□□□ -0.61
HLA-DMBP28068 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC11.26□□□□□ -0.61
HLA-DMBP28068 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DMBP28068 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DMBP28068 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DMBP28068 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DMBP28068 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC11.26□□□□□ -0.61
HLA-DMBP28068 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DMBP28068 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC11.26□□□□□ -0.61
HLA-DMBP28068 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
HLA-DMBP28068 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DMBP28068 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
HLA-DMBP28068 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms