Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
COL5A3P25940 CDCA4P4-201ENST00000435216 680 ntBASIC17.82■□□□□ 0.44
COL5A3P25940 PILRA-205ENST00000453419 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A3P25940 WWC2-208ENST00000508747 1216 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A3P25940 SMUG1-221ENST00000514196 553 ntTSL 4 BASIC17.82■□□□□ 0.44
COL5A3P25940 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A3P25940 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A3P25940 HNRNPA1P5-201ENST00000558213 966 ntBASIC17.82■□□□□ 0.44
COL5A3P25940 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC17.82■□□□□ 0.44
COL5A3P25940 AC073869.4-201ENST00000620841 800 ntBASIC17.82■□□□□ 0.44
COL5A3P25940 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A3P25940 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC17.82■□□□□ 0.44
COL5A3P25940 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A3P25940 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A3P25940 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A3P25940 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
COL5A3P25940 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A3P25940 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A3P25940 AC073347.1-201ENST00000421633 2643 ntBASIC17.82■□□□□ 0.44
COL5A3P25940 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
COL5A3P25940 AC023157.3-201ENST00000619086 2088 ntBASIC17.82■□□□□ 0.44
COL5A3P25940 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC17.82■□□□□ 0.44
COL5A3P25940 CNMD-203ENST00000448904 1444 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A3P25940 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A3P25940 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A3P25940 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A3P25940 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL5A3P25940 TMEM14B-201ENST00000379530 787 ntTSL 2 BASIC17.81■□□□□ 0.44
COL5A3P25940 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL5A3P25940 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC17.81■□□□□ 0.44
COL5A3P25940 AC103563.1-201ENST00000429316 123 ntBASIC17.81■□□□□ 0.44
COL5A3P25940 PLSCR1-202ENST00000448787 996 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
COL5A3P25940 CASP3-205ENST00000517513 964 ntTSL 5 BASIC17.81■□□□□ 0.44
COL5A3P25940 OVOL3-201ENST00000585332 695 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
COL5A3P25940 AC005777.1-201ENST00000588332 187 ntBASIC17.81■□□□□ 0.44
COL5A3P25940 AC008982.2-201ENST00000600473 493 ntTSL 5 BASIC17.81■□□□□ 0.44
COL5A3P25940 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
COL5A3P25940 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC17.81■□□□□ 0.44
COL5A3P25940 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL5A3P25940 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC17.81■□□□□ 0.44
COL5A3P25940 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL5A3P25940 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
COL5A3P25940 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
COL5A3P25940 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL5A3P25940 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
COL5A3P25940 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL5A3P25940 MEFV-203ENST00000536379 1713 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
COL5A3P25940 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC17.81■□□□□ 0.44
COL5A3P25940 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL5A3P25940 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL5A3P25940 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL5A3P25940 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL5A3P25940 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC17.81■□□□□ 0.44
COL5A3P25940 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL5A3P25940 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL5A3P25940 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.81■□□□□ 0.44
COL5A3P25940 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC17.81■□□□□ 0.44
COL5A3P25940 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL5A3P25940 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL5A3P25940 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL5A3P25940 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
COL5A3P25940 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC17.81■□□□□ 0.44
COL5A3P25940 RPL10L-201ENST00000298283 812 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
COL5A3P25940 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC17.81■□□□□ 0.44
COL5A3P25940 HMGA1P1-201ENST00000415560 1062 ntBASIC17.81■□□□□ 0.44
COL5A3P25940 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC17.81■□□□□ 0.44
COL5A3P25940 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC17.81■□□□□ 0.44
COL5A3P25940 CLDN25-201ENST00000453129 754 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
COL5A3P25940 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC17.81■□□□□ 0.44
COL5A3P25940 BCRP4-201ENST00000506079 804 ntBASIC17.81■□□□□ 0.44
COL5A3P25940 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC17.81■□□□□ 0.44
COL5A3P25940 MIR6816-201ENST00000620368 66 ntBASIC17.81■□□□□ 0.44
COL5A3P25940 Metazoa_SRP.128-201ENST00000620543 314 ntBASIC17.81■□□□□ 0.44
COL5A3P25940 BX322534.1-201ENST00000635574 241 ntBASIC17.81■□□□□ 0.44
COL5A3P25940 AC215524.1-201ENST00000635696 241 ntBASIC17.81■□□□□ 0.44
COL5A3P25940 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL5A3P25940 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL5A3P25940 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL5A3P25940 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL5A3P25940 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
COL5A3P25940 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL5A3P25940 RFX8-201ENST00000428343 1686 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
COL5A3P25940 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC17.8■□□□□ 0.44
COL5A3P25940 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL5A3P25940 AL022313.4-201ENST00000562756 2046 ntBASIC17.8■□□□□ 0.44
COL5A3P25940 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC17.8■□□□□ 0.44
COL5A3P25940 MTHFR-210ENST00000641407 2387 ntBASIC17.8■□□□□ 0.44
COL5A3P25940 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL5A3P25940 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL5A3P25940 CALML6-201ENST00000307786 1101 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL5A3P25940 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC17.8■□□□□ 0.44
COL5A3P25940 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC17.8■□□□□ 0.44
COL5A3P25940 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL5A3P25940 KRT18P15-201ENST00000458108 1291 ntBASIC17.8■□□□□ 0.44
COL5A3P25940 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC17.8■□□□□ 0.44
COL5A3P25940 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL5A3P25940 FBXO36P1-201ENST00000579006 471 ntBASIC17.8■□□□□ 0.44
COL5A3P25940 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL5A3P25940 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
COL5A3P25940 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms