Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC15.45■□□□□ 0.06
BDNFP23560 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
BDNFP23560 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
BDNFP23560 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
BDNFP23560 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
BDNFP23560 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
BDNFP23560 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
BDNFP23560 HNRNPA1P41-201ENST00000397777 928 ntBASIC15.45■□□□□ 0.06
BDNFP23560 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
BDNFP23560 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
BDNFP23560 SLC25A24P2-201ENST00000415059 510 ntBASIC15.45■□□□□ 0.06
BDNFP23560 ACTG1P2-201ENST00000415776 1125 ntBASIC15.45■□□□□ 0.06
BDNFP23560 AL008707.1-201ENST00000422498 534 ntBASIC15.45■□□□□ 0.06
BDNFP23560 ACTG1P11-201ENST00000425411 1125 ntBASIC15.45■□□□□ 0.06
BDNFP23560 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC15.45■□□□□ 0.06
BDNFP23560 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC15.45■□□□□ 0.06
BDNFP23560 RN7SL11P-201ENST00000471305 293 ntBASIC15.45■□□□□ 0.06
BDNFP23560 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC15.45■□□□□ 0.06
BDNFP23560 IGHVIII-5-2-201ENST00000522505 261 ntBASIC15.45■□□□□ 0.06
BDNFP23560 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC15.45■□□□□ 0.06
BDNFP23560 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC15.45■□□□□ 0.06
BDNFP23560 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC15.45■□□□□ 0.06
BDNFP23560 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
BDNFP23560 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
BDNFP23560 KLK3-207ENST00000595952 969 ntTSL 3 BASIC15.45■□□□□ 0.06
BDNFP23560 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
BDNFP23560 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC15.45■□□□□ 0.06
BDNFP23560 AL021578.1-201ENST00000613646 709 ntBASIC15.45■□□□□ 0.06
BDNFP23560 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC15.45■□□□□ 0.06
BDNFP23560 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
BDNFP23560 AC100757.4-201ENST00000626934 759 ntBASIC15.45■□□□□ 0.06
BDNFP23560 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC15.45■□□□□ 0.06
BDNFP23560 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
BDNFP23560 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
BDNFP23560 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
BDNFP23560 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
BDNFP23560 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
BDNFP23560 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
BDNFP23560 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
BDNFP23560 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
BDNFP23560 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
BDNFP23560 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
BDNFP23560 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
BDNFP23560 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC15.45■□□□□ 0.06
BDNFP23560 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
BDNFP23560 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
BDNFP23560 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
BDNFP23560 AC015656.1-201ENST00000624209 3578 ntBASIC15.45■□□□□ 0.06
BDNFP23560 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC15.45■□□□□ 0.06
BDNFP23560 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
BDNFP23560 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
BDNFP23560 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
BDNFP23560 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
BDNFP23560 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
BDNFP23560 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
BDNFP23560 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
BDNFP23560 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
BDNFP23560 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
BDNFP23560 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
BDNFP23560 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
BDNFP23560 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC15.44■□□□□ 0.06
BDNFP23560 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC15.44■□□□□ 0.06
BDNFP23560 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
BDNFP23560 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
BDNFP23560 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC15.44■□□□□ 0.06
BDNFP23560 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
BDNFP23560 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
BDNFP23560 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC15.44■□□□□ 0.06
BDNFP23560 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC15.44■□□□□ 0.06
BDNFP23560 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC15.44■□□□□ 0.06
BDNFP23560 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
BDNFP23560 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
BDNFP23560 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
BDNFP23560 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC15.44■□□□□ 0.06
BDNFP23560 RN7SKP214-201ENST00000364208 315 ntBASIC15.44■□□□□ 0.06
BDNFP23560 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
BDNFP23560 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC15.44■□□□□ 0.06
BDNFP23560 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
BDNFP23560 TSACC-208ENST00000481479 741 ntTSL 2 BASIC15.44■□□□□ 0.06
BDNFP23560 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC15.44■□□□□ 0.06
BDNFP23560 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
BDNFP23560 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC15.44■□□□□ 0.06
BDNFP23560 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
BDNFP23560 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC15.44■□□□□ 0.06
BDNFP23560 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC15.44■□□□□ 0.06
BDNFP23560 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC15.44■□□□□ 0.06
BDNFP23560 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC15.44■□□□□ 0.06
BDNFP23560 DDX5-235ENST00000630471 473 ntTSL 4 BASIC15.44■□□□□ 0.06
BDNFP23560 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC15.44■□□□□ 0.06
BDNFP23560 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
BDNFP23560 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
BDNFP23560 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC15.44■□□□□ 0.06
BDNFP23560 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
BDNFP23560 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC15.44■□□□□ 0.06
BDNFP23560 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
BDNFP23560 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC15.44■□□□□ 0.06
BDNFP23560 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
BDNFP23560 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
BDNFP23560 AL157791.1-201ENST00000553667 1699 ntBASIC15.44■□□□□ 0.06
BDNFP23560 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms