Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 LINC00399-201ENST00000439008 414 ntTSL 2 BASIC14.73□□□□□ -0.05
VCANP13611 AC078852.1-201ENST00000515842 441 ntTSL 3 BASIC14.73□□□□□ -0.05
VCANP13611 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC14.73□□□□□ -0.05
VCANP13611 DSCAS-201ENST00000581836 553 ntTSL 4 BASIC14.73□□□□□ -0.05
VCANP13611 RN7SL556P-201ENST00000582856 298 ntBASIC14.73□□□□□ -0.05
VCANP13611 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC14.73□□□□□ -0.05
VCANP13611 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC14.73□□□□□ -0.05
VCANP13611 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
VCANP13611 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VCANP13611 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC14.72□□□□□ -0.05
VCANP13611 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC14.72□□□□□ -0.05
VCANP13611 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VCANP13611 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VCANP13611 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC14.72□□□□□ -0.05
VCANP13611 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC14.72□□□□□ -0.05
VCANP13611 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC14.72□□□□□ -0.05
VCANP13611 HIGD2B-201ENST00000311755 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VCANP13611 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC14.72□□□□□ -0.05
VCANP13611 CETN3-205ENST00000522842 664 ntTSL 2 BASIC14.72□□□□□ -0.05
VCANP13611 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC14.72□□□□□ -0.05
VCANP13611 AC092720.1-202ENST00000565824 555 ntTSL 4 BASIC14.72□□□□□ -0.05
VCANP13611 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC14.72□□□□□ -0.05
VCANP13611 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VCANP13611 AC105250.1-201ENST00000509378 2057 ntBASIC14.72□□□□□ -0.05
VCANP13611 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VCANP13611 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VCANP13611 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
VCANP13611 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.72□□□□□ -0.05
VCANP13611 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
VCANP13611 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VCANP13611 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
VCANP13611 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC14.72□□□□□ -0.05
VCANP13611 NR1I3-201ENST00000367979 1074 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VCANP13611 NR1I3-207ENST00000367985 1074 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VCANP13611 MRPL23-203ENST00000397294 551 ntTSL 4 BASIC14.72□□□□□ -0.05
VCANP13611 KCNMA1-AS1-201ENST00000426234 863 ntTSL 5 BASIC14.72□□□□□ -0.05
VCANP13611 NR1I3-225ENST00000508387 634 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VCANP13611 RPL10P8-201ENST00000522888 313 ntBASIC14.72□□□□□ -0.05
VCANP13611 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
VCANP13611 AC010319.4-201ENST00000593957 691 ntTSL 3 BASIC14.72□□□□□ -0.05
VCANP13611 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
VCANP13611 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
VCANP13611 AC090616.6-203ENST00000579186 1945 ntBASIC14.72□□□□□ -0.05
VCANP13611 ZNF684-201ENST00000372696 1009 ntTSL 3 BASIC14.71□□□□□ -0.05
VCANP13611 KRT18P62-201ENST00000446618 1287 ntBASIC14.71□□□□□ -0.05
VCANP13611 RN7SL684P-201ENST00000465665 294 ntBASIC14.71□□□□□ -0.05
VCANP13611 EEF1GP8-201ENST00000506566 1154 ntBASIC14.71□□□□□ -0.05
VCANP13611 MIR5193-201ENST00000584510 109 ntBASIC14.71□□□□□ -0.05
VCANP13611 AL590491.2-202ENST00000611126 418 ntTSL 5 BASIC14.71□□□□□ -0.05
VCANP13611 AC115618.3-201ENST00000623114 425 ntBASIC14.71□□□□□ -0.05
VCANP13611 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC14.71□□□□□ -0.05
VCANP13611 SALL4P5-201ENST00000419001 1760 ntBASIC14.71□□□□□ -0.05
VCANP13611 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
VCANP13611 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC14.71□□□□□ -0.05
VCANP13611 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.71□□□□□ -0.05
VCANP13611 TCEAL4-206ENST00000468024 1135 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
VCANP13611 AC139887.2-201ENST00000503571 531 ntTSL 4 BASIC14.71□□□□□ -0.05
VCANP13611 AC138035.2-201ENST00000509192 727 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
VCANP13611 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
VCANP13611 LINC02193-207ENST00000621799 723 ntTSL 5 BASIC14.71□□□□□ -0.05
VCANP13611 AC069287.1-202ENST00000622626 723 ntTSL 5 BASIC14.71□□□□□ -0.05
VCANP13611 AC245100.4-201ENST00000634549 1082 ntTSL 5 BASIC14.71□□□□□ -0.05
VCANP13611 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC14.71□□□□□ -0.05
VCANP13611 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VCANP13611 UBE2V1-222ENST00000557021 2258 ntTSL 5 BASIC14.71□□□□□ -0.05
VCANP13611 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC14.71□□□□□ -0.05
VCANP13611 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
VCANP13611 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VCANP13611 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
VCANP13611 KRT18P33-201ENST00000398525 1043 ntBASIC14.71□□□□□ -0.06
VCANP13611 RPSAP12-201ENST00000435879 888 ntBASIC14.71□□□□□ -0.06
VCANP13611 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC14.71□□□□□ -0.06
VCANP13611 EFNA5-204ENST00000509503 637 ntTSL 5 BASIC14.71□□□□□ -0.06
VCANP13611 HNRNPA1P7-201ENST00000521273 963 ntBASIC14.71□□□□□ -0.06
VCANP13611 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC14.71□□□□□ -0.06
VCANP13611 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC14.71□□□□□ -0.06
VCANP13611 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
VCANP13611 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC14.71□□□□□ -0.06
VCANP13611 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
VCANP13611 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
VCANP13611 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
VCANP13611 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
VCANP13611 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
VCANP13611 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
VCANP13611 YY1P2-201ENST00000438766 948 ntBASIC14.7□□□□□ -0.06
VCANP13611 AL121787.1-202ENST00000445838 876 ntTSL 5 BASIC14.7□□□□□ -0.06
VCANP13611 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC14.7□□□□□ -0.06
VCANP13611 AC026336.4-201ENST00000624565 1050 ntBASIC14.7□□□□□ -0.06
VCANP13611 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
VCANP13611 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
VCANP13611 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
VCANP13611 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
VCANP13611 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
VCANP13611 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
VCANP13611 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC14.7□□□□□ -0.06
VCANP13611 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC14.7□□□□□ -0.06
VCANP13611 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC14.7□□□□□ -0.06
VCANP13611 GPR45-201ENST00000258456 1307 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
VCANP13611 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
VCANP13611 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms