Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TPM1P09493 FAM86LP-201ENST00000478302 853 ntBASIC16.28■□□□□ 0.2
TPM1P09493 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC16.28■□□□□ 0.2
TPM1P09493 DHDH-204ENST00000523250 634 ntTSL 5 BASIC16.28■□□□□ 0.2
TPM1P09493 AC092865.5-201ENST00000545435 363 ntBASIC16.28■□□□□ 0.2
TPM1P09493 AC140878.1-201ENST00000565277 250 ntBASIC16.28■□□□□ 0.2
TPM1P09493 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC16.28■□□□□ 0.2
TPM1P09493 AL049840.4-201ENST00000602422 811 ntBASIC16.28■□□□□ 0.2
TPM1P09493 AL844908.2-201ENST00000609461 460 ntBASIC16.28■□□□□ 0.2
TPM1P09493 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TPM1P09493 MIR6074-201ENST00000612054 107 ntBASIC16.28■□□□□ 0.2
TPM1P09493 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
TPM1P09493 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TPM1P09493 WARS-203ENST00000358655 2466 ntTSL 2 BASIC16.28■□□□□ 0.2
TPM1P09493 NFATC2-202ENST00000396009 7437 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
TPM1P09493 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TPM1P09493 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC16.28■□□□□ 0.2
TPM1P09493 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
TPM1P09493 SALL4P5-201ENST00000419001 1760 ntBASIC16.28■□□□□ 0.2
TPM1P09493 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC16.28■□□□□ 0.2
TPM1P09493 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC16.28■□□□□ 0.2
TPM1P09493 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
TPM1P09493 AP000347.1-201ENST00000417194 5004 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TPM1P09493 CLK3P2-201ENST00000427566 1453 ntBASIC16.28■□□□□ 0.2
TPM1P09493 BTBD7P1-201ENST00000447253 1453 ntBASIC16.28■□□□□ 0.2
TPM1P09493 SUGP2-203ENST00000452918 6176 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
TPM1P09493 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TPM1P09493 FANCC-201ENST00000289081 4585 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TPM1P09493 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
TPM1P09493 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
TPM1P09493 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
TPM1P09493 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
TPM1P09493 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
TPM1P09493 AL136172.1-201ENST00000598590 1394 ntBASIC16.27■□□□□ 0.2
TPM1P09493 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TPM1P09493 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TPM1P09493 CACNA1G-233ENST00000515765 6981 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
TPM1P09493 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TPM1P09493 PBRM1-204ENST00000394830 5071 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
TPM1P09493 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC16.27■□□□□ 0.2
TPM1P09493 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC16.27■□□□□ 0.2
TPM1P09493 PPP1R15B-201ENST00000367188 5227 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TPM1P09493 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TPM1P09493 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
TPM1P09493 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC16.27■□□□□ 0.2
TPM1P09493 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TPM1P09493 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC16.27■□□□□ 0.2
TPM1P09493 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC16.27■□□□□ 0.2
TPM1P09493 TLE1P1-201ENST00000422965 589 ntBASIC16.27■□□□□ 0.2
TPM1P09493 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TPM1P09493 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC16.27■□□□□ 0.2
TPM1P09493 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TPM1P09493 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC16.27■□□□□ 0.2
TPM1P09493 AC025678.2-201ENST00000562061 970 ntBASIC16.27■□□□□ 0.2
TPM1P09493 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TPM1P09493 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TPM1P09493 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC16.27■□□□□ 0.2
TPM1P09493 NPHP3-ACAD11-201ENST00000471702 7784 ntTSL 2 BASIC16.27■□□□□ 0.19
TPM1P09493 MEGF11-201ENST00000288745 5707 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
TPM1P09493 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
TPM1P09493 CSPG4P11-201ENST00000560634 4910 ntBASIC16.27■□□□□ 0.19
TPM1P09493 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TPM1P09493 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC16.27■□□□□ 0.19
TPM1P09493 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC16.27■□□□□ 0.19
TPM1P09493 PI4KA-201ENST00000255882 6752 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TPM1P09493 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
TPM1P09493 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TPM1P09493 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
TPM1P09493 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TPM1P09493 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TPM1P09493 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC16.27■□□□□ 0.19
TPM1P09493 REXO1L1P-201ENST00000379010 6598 ntBASIC16.27■□□□□ 0.19
TPM1P09493 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
TPM1P09493 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TPM1P09493 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TPM1P09493 AC005562.1-201ENST00000583030 3219 ntBASIC16.26■□□□□ 0.19
TPM1P09493 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
TPM1P09493 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TPM1P09493 SEZ6L-203ENST00000360929 6307 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TPM1P09493 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
TPM1P09493 COL1A1-201ENST00000225964 6727 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TPM1P09493 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC16.26■□□□□ 0.19
TPM1P09493 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TPM1P09493 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TPM1P09493 DSE-201ENST00000331677 7237 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
TPM1P09493 FAM122B-202ENST00000343004 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
TPM1P09493 APAF1-202ENST00000357310 7055 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
TPM1P09493 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TPM1P09493 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
TPM1P09493 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TPM1P09493 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC16.26■□□□□ 0.19
TPM1P09493 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
TPM1P09493 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC16.26■□□□□ 0.19
TPM1P09493 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC16.26■□□□□ 0.19
TPM1P09493 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TPM1P09493 WRB-204ENST00000398753 699 ntTSL 3 BASIC16.26■□□□□ 0.19
TPM1P09493 KRT18P13-201ENST00000400056 1290 ntBASIC16.26■□□□□ 0.19
TPM1P09493 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.26■□□□□ 0.19
TPM1P09493 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC16.26■□□□□ 0.19
TPM1P09493 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms