Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 PGBD1-201ENST00000259883 3100 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CXCL1P09341 AC144450.1-201ENST00000366424 1641 ntTSL 2 BASIC11.42□□□□□ -0.58
CXCL1P09341 BNIP3L-201ENST00000380629 3610 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CXCL1P09341 PTPRN-202ENST00000409251 3622 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CXCL1P09341 SPAG5-AS1-201ENST00000414744 2143 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CXCL1P09341 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC11.42□□□□□ -0.58
CXCL1P09341 RTL5-202ENST00000609883 4105 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
CXCL1P09341 SCNN1B-202ENST00000343070 2597 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CXCL1P09341 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
CXCL1P09341 AC009501.1-201ENST00000429952 2069 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CXCL1P09341 SMAD1-215ENST00000515385 2085 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
CXCL1P09341 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CXCL1P09341 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CXCL1P09341 F2-205ENST00000530231 1849 ntTSL 5 BASIC11.42□□□□□ -0.58
CXCL1P09341 DNM3-201ENST00000355305 3280 ntTSL 5 BASIC11.42□□□□□ -0.58
CXCL1P09341 BANK1-202ENST00000428908 3044 ntTSL 5 BASIC11.42□□□□□ -0.58
CXCL1P09341 FOXN3-201ENST00000261302 2542 ntAPPRIS ALT1 TSL 5 BASIC11.42□□□□□ -0.58
CXCL1P09341 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CXCL1P09341 INCENP-201ENST00000278849 3698 ntAPPRIS P3 TSL 5 BASIC11.42□□□□□ -0.58
CXCL1P09341 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
CXCL1P09341 MUC20-203ENST00000436408 2463 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
CXCL1P09341 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CXCL1P09341 UGGT2-201ENST00000376712 2240 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CXCL1P09341 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC11.42□□□□□ -0.58
CXCL1P09341 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC11.42□□□□□ -0.58
CXCL1P09341 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CXCL1P09341 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
CXCL1P09341 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
CXCL1P09341 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CXCL1P09341 BEX3-201ENST00000361298 921 ntTSL 2 BASIC11.42□□□□□ -0.58
CXCL1P09341 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CXCL1P09341 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
CXCL1P09341 AC104457.1-201ENST00000401024 814 ntBASIC11.42□□□□□ -0.58
CXCL1P09341 TFAMP1-201ENST00000412727 736 ntBASIC11.42□□□□□ -0.58
CXCL1P09341 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC11.42□□□□□ -0.58
CXCL1P09341 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CXCL1P09341 AC145285.3-201ENST00000564603 959 ntBASIC11.42□□□□□ -0.58
CXCL1P09341 AP001005.1-201ENST00000571755 1248 ntBASIC11.42□□□□□ -0.58
CXCL1P09341 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
CXCL1P09341 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC11.42□□□□□ -0.58
CXCL1P09341 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC11.42□□□□□ -0.58
CXCL1P09341 AC012313.10-201ENST00000623509 926 ntBASIC11.42□□□□□ -0.58
CXCL1P09341 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC11.42□□□□□ -0.58
CXCL1P09341 SLC13A4-201ENST00000354042 2897 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CXCL1P09341 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC11.42□□□□□ -0.58
CXCL1P09341 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC11.42□□□□□ -0.58
CXCL1P09341 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CXCL1P09341 CLK3P2-201ENST00000427566 1453 ntBASIC11.42□□□□□ -0.58
CXCL1P09341 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CXCL1P09341 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC11.42□□□□□ -0.58
CXCL1P09341 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
CXCL1P09341 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC11.42□□□□□ -0.58
CXCL1P09341 HSPA8P5-201ENST00000456928 2069 ntBASIC11.42□□□□□ -0.58
CXCL1P09341 TJAP1-201ENST00000259751 2720 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
CXCL1P09341 RSPO2-202ENST00000517781 2748 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CXCL1P09341 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
CXCL1P09341 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC11.42□□□□□ -0.58
CXCL1P09341 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CXCL1P09341 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
CXCL1P09341 IFFO1-206ENST00000465801 2850 ntTSL 5 BASIC11.42□□□□□ -0.58
CXCL1P09341 SPINT1-201ENST00000344051 3056 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
CXCL1P09341 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC11.41□□□□□ -0.58
CXCL1P09341 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC11.41□□□□□ -0.58
CXCL1P09341 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC11.41□□□□□ -0.58
CXCL1P09341 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 POLD1-201ENST00000440232 3444 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 ATXN2L-205ENST00000395547 3981 ntAPPRIS P4 TSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 RBM19-201ENST00000261741 4194 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC11.41□□□□□ -0.58
CXCL1P09341 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 ANXA11-201ENST00000265447 2526 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
CXCL1P09341 PNMA5-204ENST00000452693 3113 ntAPPRIS P2 TSL 2 BASIC11.41□□□□□ -0.58
CXCL1P09341 ABCB9-201ENST00000280560 3517 ntAPPRIS P2 TSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 TMEM134-201ENST00000308022 3534 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
CXCL1P09341 SLC38A7-215ENST00000570101 4549 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 SYK-203ENST00000375751 4936 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 PEAR1-201ENST00000292357 4866 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
CXCL1P09341 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 ARMCX2-202ENST00000330154 2663 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 AC115284.2-201ENST00000624646 2054 ntBASIC11.41□□□□□ -0.58
CXCL1P09341 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC11.41□□□□□ -0.58
CXCL1P09341 AC004870.1-201ENST00000315132 882 ntBASIC11.41□□□□□ -0.58
CXCL1P09341 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC11.41□□□□□ -0.58
CXCL1P09341 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC11.41□□□□□ -0.58
CXCL1P09341 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC11.41□□□□□ -0.58
CXCL1P09341 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
CXCL1P09341 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC11.41□□□□□ -0.58
CXCL1P09341 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC11.41□□□□□ -0.58
CXCL1P09341 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC11.41□□□□□ -0.58
CXCL1P09341 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 127 ms