Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC14.28□□□□□ -0.12
TNFP01375 RN7SL258P-201ENST00000478664 300 ntBASIC14.28□□□□□ -0.12
TNFP01375 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC14.28□□□□□ -0.12
TNFP01375 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC14.28□□□□□ -0.12
TNFP01375 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC14.28□□□□□ -0.12
TNFP01375 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
TNFP01375 AC242376.1-201ENST00000559033 726 ntBASIC14.28□□□□□ -0.12
TNFP01375 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC14.28□□□□□ -0.12
TNFP01375 CTBP1-AS2-206ENST00000581398 5652 ntBASIC14.28□□□□□ -0.12
TNFP01375 RN7SL190P-201ENST00000582519 257 ntBASIC14.28□□□□□ -0.12
TNFP01375 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC14.28□□□□□ -0.12
TNFP01375 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
TNFP01375 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
TNFP01375 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TNFP01375 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC14.28□□□□□ -0.12
TNFP01375 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC14.28□□□□□ -0.12
TNFP01375 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC14.28□□□□□ -0.12
TNFP01375 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
TNFP01375 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
TNFP01375 TBC1D3J-201ENST00000620719 1426 ntBASIC14.28□□□□□ -0.12
TNFP01375 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TNFP01375 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC14.28□□□□□ -0.12
TNFP01375 MARS-233ENST00000628866 2583 ntTSL 5 BASIC14.28□□□□□ -0.12
TNFP01375 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC14.28□□□□□ -0.12
TNFP01375 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
TNFP01375 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
TNFP01375 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TNFP01375 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
TNFP01375 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
TNFP01375 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
TNFP01375 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
TNFP01375 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
TNFP01375 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
TNFP01375 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC14.27□□□□□ -0.12
TNFP01375 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
TNFP01375 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
TNFP01375 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
TNFP01375 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC14.27□□□□□ -0.12
TNFP01375 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
TNFP01375 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
TNFP01375 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
TNFP01375 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC14.27□□□□□ -0.12
TNFP01375 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC14.27□□□□□ -0.12
TNFP01375 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
TNFP01375 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
TNFP01375 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
TNFP01375 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
TNFP01375 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
TNFP01375 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC14.27□□□□□ -0.12
TNFP01375 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC14.27□□□□□ -0.12
TNFP01375 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
TNFP01375 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
TNFP01375 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
TNFP01375 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC14.27□□□□□ -0.13
TNFP01375 PARVG-202ENST00000415224 999 ntTSL 2 BASIC14.27□□□□□ -0.13
TNFP01375 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC14.27□□□□□ -0.13
TNFP01375 AC026320.2-201ENST00000434379 478 ntBASIC14.27□□□□□ -0.13
TNFP01375 ST13P19-201ENST00000442505 1124 ntBASIC14.27□□□□□ -0.13
TNFP01375 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC14.27□□□□□ -0.13
TNFP01375 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
TNFP01375 MIR4754-201ENST00000582477 89 ntBASIC14.27□□□□□ -0.13
TNFP01375 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC14.27□□□□□ -0.13
TNFP01375 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC14.27□□□□□ -0.13
TNFP01375 LINC01783-202ENST00000614408 828 ntBASIC14.27□□□□□ -0.13
TNFP01375 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC14.27□□□□□ -0.13
TNFP01375 BX284668.2-205ENST00000619677 828 ntBASIC14.27□□□□□ -0.13
TNFP01375 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
TNFP01375 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
TNFP01375 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
TNFP01375 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
TNFP01375 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
TNFP01375 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
TNFP01375 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC14.27□□□□□ -0.13
TNFP01375 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
TNFP01375 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.13
TNFP01375 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
TNFP01375 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
TNFP01375 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
TNFP01375 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
TNFP01375 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC14.27□□□□□ -0.13
TNFP01375 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
TNFP01375 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
TNFP01375 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
TNFP01375 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
TNFP01375 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC14.27□□□□□ -0.13
TNFP01375 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
TNFP01375 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC14.26□□□□□ -0.13
TNFP01375 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
TNFP01375 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
TNFP01375 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC14.26□□□□□ -0.13
TNFP01375 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TNFP01375 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
TNFP01375 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TNFP01375 AC104640.1-201ENST00000562617 2109 ntBASIC14.26□□□□□ -0.13
TNFP01375 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
TNFP01375 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
TNFP01375 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
TNFP01375 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
TNFP01375 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
TNFP01375 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms