Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM1O00151 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM1O00151 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM1O00151 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM1O00151 SLC6A2-201ENST00000219833 2858 ntTSL 5 BASIC14.1□□□□□ -0.15
PDLIM1O00151 KRT42P-202ENST00000438131 2895 ntTSL 2 BASIC14.1□□□□□ -0.15
PDLIM1O00151 AL365181.3-201ENST00000605886 3222 ntBASIC14.1□□□□□ -0.15
PDLIM1O00151 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM1O00151 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM1O00151 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC14.1□□□□□ -0.15
PDLIM1O00151 COPS7B-203ENST00000373608 2563 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM1O00151 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
PDLIM1O00151 CCDC88C-201ENST00000331194 3104 ntTSL 5 BASIC14.1□□□□□ -0.15
PDLIM1O00151 SLC45A1-201ENST00000289877 2401 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM1O00151 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM1O00151 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM1O00151 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC14.1□□□□□ -0.15
PDLIM1O00151 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
PDLIM1O00151 ILF3-201ENST00000250241 3035 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM1O00151 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
PDLIM1O00151 PIK3R6-204ENST00000619866 3041 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
PDLIM1O00151 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM1O00151 PES1-204ENST00000402284 2144 ntTSL 5 BASIC14.09□□□□□ -0.15
PDLIM1O00151 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
PDLIM1O00151 HNF4A-204ENST00000415691 2302 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM1O00151 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC14.09□□□□□ -0.15
PDLIM1O00151 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM1O00151 PTH2R-201ENST00000272847 2713 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM1O00151 ELP4-203ENST00000395934 1961 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM1O00151 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC14.09□□□□□ -0.15
PDLIM1O00151 GOLGA2P5-201ENST00000266746 2395 ntBASIC14.09□□□□□ -0.15
PDLIM1O00151 AC107375.1-201ENST00000564464 2231 ntBASIC14.09□□□□□ -0.15
PDLIM1O00151 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM1O00151 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC14.09□□□□□ -0.15
PDLIM1O00151 LGALS9-201ENST00000302228 3018 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM1O00151 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC14.09□□□□□ -0.15
PDLIM1O00151 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM1O00151 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC14.09□□□□□ -0.15
PDLIM1O00151 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM1O00151 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC14.09□□□□□ -0.15
PDLIM1O00151 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
PDLIM1O00151 HNRNPA3P1-201ENST00000401429 1139 ntBASIC14.09□□□□□ -0.15
PDLIM1O00151 MRPS18AP1-201ENST00000414458 589 ntBASIC14.09□□□□□ -0.15
PDLIM1O00151 AC074338.1-201ENST00000416825 156 ntBASIC14.09□□□□□ -0.15
PDLIM1O00151 KRT18P64-201ENST00000434946 1219 ntBASIC14.09□□□□□ -0.15
PDLIM1O00151 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC14.09□□□□□ -0.15
PDLIM1O00151 HNRNPA3P5-201ENST00000455201 833 ntBASIC14.09□□□□□ -0.15
PDLIM1O00151 SERBP1P3-201ENST00000459980 809 ntBASIC14.09□□□□□ -0.15
PDLIM1O00151 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC14.09□□□□□ -0.15
PDLIM1O00151 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM1O00151 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM1O00151 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC14.09□□□□□ -0.15
PDLIM1O00151 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC14.09□□□□□ -0.15
PDLIM1O00151 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC14.09□□□□□ -0.15
PDLIM1O00151 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM1O00151 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC14.09□□□□□ -0.15
PDLIM1O00151 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC14.09□□□□□ -0.15
PDLIM1O00151 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM1O00151 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC14.09□□□□□ -0.15
PDLIM1O00151 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
PDLIM1O00151 AL512361.1-201ENST00000554200 418 ntBASIC14.09□□□□□ -0.15
PDLIM1O00151 AC010336.2-201ENST00000564226 506 ntBASIC14.09□□□□□ -0.15
PDLIM1O00151 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.09□□□□□ -0.15
PDLIM1O00151 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC14.09□□□□□ -0.15
PDLIM1O00151 TBCB-211ENST00000589996 724 ntTSL 3 BASIC14.09□□□□□ -0.15
PDLIM1O00151 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC14.09□□□□□ -0.15
PDLIM1O00151 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC14.09□□□□□ -0.15
PDLIM1O00151 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
PDLIM1O00151 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC14.09□□□□□ -0.15
PDLIM1O00151 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC14.09□□□□□ -0.15
PDLIM1O00151 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC14.09□□□□□ -0.15
PDLIM1O00151 SLC4A8-205ENST00000535225 2262 ntTSL 2 BASIC14.09□□□□□ -0.15
PDLIM1O00151 MYOM3-201ENST00000338909 2693 ntTSL 2 BASIC14.09□□□□□ -0.15
PDLIM1O00151 FOSB-212ENST00000592811 3089 ntTSL 2 BASIC14.09□□□□□ -0.15
PDLIM1O00151 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM1O00151 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM1O00151 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM1O00151 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM1O00151 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM1O00151 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC14.09□□□□□ -0.15
PDLIM1O00151 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM1O00151 AL157414.3-201ENST00000624276 1954 ntBASIC14.09□□□□□ -0.15
PDLIM1O00151 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM1O00151 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
PDLIM1O00151 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC14.09□□□□□ -0.15
PDLIM1O00151 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
PDLIM1O00151 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
PDLIM1O00151 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
PDLIM1O00151 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC14.08□□□□□ -0.15
PDLIM1O00151 NISCH-212ENST00000488380 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
PDLIM1O00151 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
PDLIM1O00151 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC14.08□□□□□ -0.15
PDLIM1O00151 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC14.08□□□□□ -0.15
PDLIM1O00151 JOSD1-201ENST00000216039 3648 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
PDLIM1O00151 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.15
PDLIM1O00151 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC14.08□□□□□ -0.15
PDLIM1O00151 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
PDLIM1O00151 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
PDLIM1O00151 RET-205ENST00000615310 4337 ntTSL 5 BASIC14.08□□□□□ -0.16
PDLIM1O00151 KRT74-201ENST00000305620 2788 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 188.6 ms