Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 AC092506.1-202ENST00000401022 528 ntBASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 SLC16A6P1-201ENST00000413214 1059 ntBASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 AL133466.1-201ENST00000447582 150 ntBASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 AL160314.3-201ENST00000556041 767 ntBASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 PAM16-211ENST00000575848 518 ntTSL 3 BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 AC091544.8-201ENST00000619490 361 ntBASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 AC027601.3-201ENST00000622907 509 ntBASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 AC008132.1-202ENST00000342005 1389 ntBASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 MYO15B-237ENST00000642007 4893 ntBASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRAIPQ9BWF2 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 RN7SKP214-201ENST00000364208 315 ntBASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 MSRA-203ENST00000441698 788 ntTSL 2 BASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 CICP12-201ENST00000455801 843 ntBASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 RN7SL720P-201ENST00000488178 304 ntBASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 MIR6720-201ENST00000611664 98 ntBASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 OR2I1P-210ENST00000642037 4691 ntBASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
TRAIPQ9BWF2 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRAIPQ9BWF2 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC16.1■□□□□ 0.17
TRAIPQ9BWF2 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRAIPQ9BWF2 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC16.1■□□□□ 0.17
TRAIPQ9BWF2 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC16.1■□□□□ 0.17
TRAIPQ9BWF2 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRAIPQ9BWF2 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
TRAIPQ9BWF2 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRAIPQ9BWF2 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRAIPQ9BWF2 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRAIPQ9BWF2 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRAIPQ9BWF2 AMT-204ENST00000427987 1646 ntTSL 5 BASIC16.1■□□□□ 0.17
TRAIPQ9BWF2 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRAIPQ9BWF2 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRAIPQ9BWF2 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRAIPQ9BWF2 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TRAIPQ9BWF2 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRAIPQ9BWF2 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC16.1■□□□□ 0.17
TRAIPQ9BWF2 AL157407.1-201ENST00000435784 904 ntBASIC16.1■□□□□ 0.17
TRAIPQ9BWF2 AC006335.1-201ENST00000445200 547 ntBASIC16.1■□□□□ 0.17
TRAIPQ9BWF2 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC16.1■□□□□ 0.17
TRAIPQ9BWF2 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TRAIPQ9BWF2 RN7SL11P-201ENST00000471305 293 ntBASIC16.1■□□□□ 0.17
TRAIPQ9BWF2 AC245884.6-201ENST00000515672 1067 ntBASIC16.1■□□□□ 0.17
TRAIPQ9BWF2 FADS2-212ENST00000522639 360 ntTSL 5 BASIC16.1■□□□□ 0.17
TRAIPQ9BWF2 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
TRAIPQ9BWF2 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC16.1■□□□□ 0.17
TRAIPQ9BWF2 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms