Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 ODCP-201ENST00000459650 1639 ntBASIC14.09□□□□□ -0.15
VPS13AQ96RL7 UCN3-201ENST00000380433 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 CBR3-AS1-210ENST00000623484 392 ntTSL 5 BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 CBR3-AS1-215ENST00000624086 594 ntTSL 5 BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 LINC01012-203ENST00000628762 743 ntTSL 5 BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VPS13AQ96RL7 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
VPS13AQ96RL7 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC14.08□□□□□ -0.15
VPS13AQ96RL7 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC14.08□□□□□ -0.15
VPS13AQ96RL7 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
VPS13AQ96RL7 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC14.08□□□□□ -0.15
VPS13AQ96RL7 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
VPS13AQ96RL7 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
VPS13AQ96RL7 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC14.08□□□□□ -0.15
VPS13AQ96RL7 IFNL3P1-201ENST00000595082 501 ntBASIC14.08□□□□□ -0.15
VPS13AQ96RL7 IFITM2-205ENST00000602569 605 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
VPS13AQ96RL7 ERAS-202ENST00000636362 826 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.15
VPS13AQ96RL7 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 LINC02486-201ENST00000604157 3000 ntBASIC14.08□□□□□ -0.16
VPS13AQ96RL7 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 CLP1-202ENST00000525602 1392 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 CYB5R2-201ENST00000299498 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 AC231533.1-201ENST00000416061 925 ntTSL 3 BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 AP000640.1-201ENST00000525337 879 ntTSL 2 BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 AP001462.1-201ENST00000594089 452 ntBASIC14.08□□□□□ -0.16
VPS13AQ96RL7 AL136982.5-201ENST00000605222 294 ntBASIC14.08□□□□□ -0.16
VPS13AQ96RL7 MCM8-AS1-201ENST00000613522 983 ntTSL 2 BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 UBE2V1-222ENST00000557021 2258 ntTSL 5 BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 IFITM1-201ENST00000328221 844 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 KRTAP10-9-201ENST00000397911 1171 ntAPPRIS P2 BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 LINC00399-201ENST00000439008 414 ntTSL 2 BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 RN7SL767P-201ENST00000493013 295 ntBASIC14.08□□□□□ -0.16
VPS13AQ96RL7 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC14.08□□□□□ -0.16
VPS13AQ96RL7 MIR4640-201ENST00000581824 90 ntBASIC14.08□□□□□ -0.16
VPS13AQ96RL7 OR3A1-202ENST00000615105 966 ntBASIC14.08□□□□□ -0.16
VPS13AQ96RL7 Metazoa_SRP.156-201ENST00000622344 262 ntBASIC14.08□□□□□ -0.16
VPS13AQ96RL7 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 CLUAP1-201ENST00000341633 1643 ntTSL 5 BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 FXYD2-202ENST00000292079 571 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 GALP-202ENST00000440823 889 ntTSL 5 BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 AC103563.2-201ENST00000442200 597 ntTSL 5 BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 IP6K2-223ENST00000453202 571 ntTSL 4 BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 EEF1GP8-201ENST00000506566 1154 ntBASIC14.07□□□□□ -0.16
VPS13AQ96RL7 AC005740.1-201ENST00000515639 522 ntBASIC14.07□□□□□ -0.16
VPS13AQ96RL7 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 USP28-214ENST00000545540 3431 ntTSL 2 BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
VPS13AQ96RL7 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms