Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC9.52□□□□□ -0.88
ALMS1Q8TCU4 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.88
ALMS1Q8TCU4 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC9.52□□□□□ -0.88
ALMS1Q8TCU4 TBC1D27-202ENST00000424239 1573 ntBASIC9.52□□□□□ -0.88
ALMS1Q8TCU4 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 U3.5-201ENST00000363448 216 ntBASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 AL359458.1-201ENST00000430821 400 ntTSL 3 BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 AL137078.1-201ENST00000446280 404 ntTSL 2 BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 LINC01502-203ENST00000447907 880 ntTSL 3 BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 NALT1-202ENST00000450304 437 ntTSL 3 BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 GLT8D2-204ENST00000547583 862 ntTSL 5 BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 AL591471.1-201ENST00000621855 229 ntBASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 RFPL3-201ENST00000249007 1488 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 LYPLA1-202ENST00000343231 1308 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 FADS1-206ENST00000460649 1559 ntTSL 2 BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 AC020658.6-201ENST00000623564 1870 ntBASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 EXOSC7-201ENST00000265564 1055 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 IGHV3-43-201ENST00000434710 434 ntAPPRIS P1 BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 AL137026.2-201ENST00000437014 841 ntTSL 2 BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 CCND3P1-201ENST00000438347 580 ntBASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 CDC37P2-201ENST00000562287 1029 ntBASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 CYP1B1-AS1-204ENST00000589303 579 ntTSL 5 BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 AC023824.1-201ENST00000562945 2975 ntBASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 ACOT6-201ENST00000381139 1004 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 AC091729.3-203ENST00000413706 674 ntTSL 5 BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 TRAPPC4-202ENST00000434101 794 ntTSL 2 BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 AC103563.2-201ENST00000442200 597 ntTSL 5 BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 GRAMD4P6-201ENST00000556999 244 ntBASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 AL008638.4-201ENST00000624792 1315 ntBASIC9.52□□□□□ -0.89
ALMS1Q8TCU4 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 LXN-201ENST00000264265 1116 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 HIGD2A-201ENST00000274787 668 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 PDE4DIP-202ENST00000369347 1137 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 PLA2G15-203ENST00000444212 943 ntTSL 2 BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 AL445471.1-201ENST00000456316 820 ntTSL 5 BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 AC004893.2-203ENST00000482799 796 ntTSL 3 BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 MBP-230ENST00000528160 584 ntTSL 5 BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 TBX5-AS1-202ENST00000531024 766 ntTSL 3 BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 GLIPR1L2-203ENST00000547164 509 ntTSL 5 BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 IRF3-213ENST00000596765 710 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 ACE3P-201ENST00000423435 1973 ntBASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 HNRNPC-205ENST00000553300 1375 ntAPPRIS P2 TSL 1 (best) BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
ALMS1Q8TCU4 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms