Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC13.84□□□□□ -0.19
DEPDC4Q8N2C3 AL512361.1-201ENST00000554200 418 ntBASIC13.84□□□□□ -0.19
DEPDC4Q8N2C3 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC13.84□□□□□ -0.19
DEPDC4Q8N2C3 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC13.84□□□□□ -0.19
DEPDC4Q8N2C3 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
DEPDC4Q8N2C3 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC13.84□□□□□ -0.19
DEPDC4Q8N2C3 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
DEPDC4Q8N2C3 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
DEPDC4Q8N2C3 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC13.84□□□□□ -0.19
DEPDC4Q8N2C3 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
DEPDC4Q8N2C3 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
DEPDC4Q8N2C3 AGGF1P1-201ENST00000509500 2073 ntBASIC13.84□□□□□ -0.19
DEPDC4Q8N2C3 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC13.84□□□□□ -0.19
DEPDC4Q8N2C3 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC13.84□□□□□ -0.19
DEPDC4Q8N2C3 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
DEPDC4Q8N2C3 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
DEPDC4Q8N2C3 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
DEPDC4Q8N2C3 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
DEPDC4Q8N2C3 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
DEPDC4Q8N2C3 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC13.84□□□□□ -0.19
DEPDC4Q8N2C3 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC13.84□□□□□ -0.19
DEPDC4Q8N2C3 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
DEPDC4Q8N2C3 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
DEPDC4Q8N2C3 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
DEPDC4Q8N2C3 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC13.83□□□□□ -0.19
DEPDC4Q8N2C3 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC13.83□□□□□ -0.19
DEPDC4Q8N2C3 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.19
DEPDC4Q8N2C3 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.19
DEPDC4Q8N2C3 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC13.83□□□□□ -0.19
DEPDC4Q8N2C3 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC13.83□□□□□ -0.19
DEPDC4Q8N2C3 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
DEPDC4Q8N2C3 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC13.83□□□□□ -0.19
DEPDC4Q8N2C3 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 MIR661-201ENST00000384842 89 ntBASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 DFFBP1-201ENST00000433250 979 ntBASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 SAMD11P1-201ENST00000571429 661 ntBASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 AL132655.2-201ENST00000596276 594 ntBASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 AC074044.1-201ENST00000609673 707 ntBASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 AL662799.1-202ENST00000614205 422 ntBASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 C5orf56-206ENST00000612967 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 AL731571.1-201ENST00000617058 5428 ntBASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 GABPB1-201ENST00000220429 2726 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
DEPDC4Q8N2C3 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC13.82□□□□□ -0.2
DEPDC4Q8N2C3 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
DEPDC4Q8N2C3 INE2-201ENST00000630399 1874 ntBASIC13.82□□□□□ -0.2
DEPDC4Q8N2C3 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC13.82□□□□□ -0.2
DEPDC4Q8N2C3 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC13.82□□□□□ -0.2
DEPDC4Q8N2C3 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
DEPDC4Q8N2C3 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
DEPDC4Q8N2C3 TRIB1-201ENST00000311922 3635 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
DEPDC4Q8N2C3 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
DEPDC4Q8N2C3 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
DEPDC4Q8N2C3 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
DEPDC4Q8N2C3 CYP2AB1P-202ENST00000454440 1456 ntBASIC13.82□□□□□ -0.2
DEPDC4Q8N2C3 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
DEPDC4Q8N2C3 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
DEPDC4Q8N2C3 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
DEPDC4Q8N2C3 MX1-218ENST00000619682 1980 ntTSL 5 BASIC13.82□□□□□ -0.2
DEPDC4Q8N2C3 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC13.82□□□□□ -0.2
DEPDC4Q8N2C3 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC13.82□□□□□ -0.2
DEPDC4Q8N2C3 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC13.82□□□□□ -0.2
DEPDC4Q8N2C3 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
DEPDC4Q8N2C3 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
DEPDC4Q8N2C3 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms