Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
CCDC60Q8IWA6 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC60Q8IWA6 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC60Q8IWA6 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC16.25■□□□□ 0.19
CCDC60Q8IWA6 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC60Q8IWA6 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC60Q8IWA6 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC60Q8IWA6 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC60Q8IWA6 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC60Q8IWA6 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC60Q8IWA6 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC60Q8IWA6 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
CCDC60Q8IWA6 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 AC134698.3-201ENST00000523880 214 ntBASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 AC124068.2-201ENST00000569473 1109 ntBASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 MIR4754-201ENST00000582477 89 ntBASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 AL133499.1-201ENST00000596207 608 ntBASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 AC015967.2-201ENST00000624092 234 ntBASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 AC006435.4-201ENST00000625037 234 ntBASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 AL356737.1-201ENST00000634391 234 ntBASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC60Q8IWA6 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 NCR3-202ENST00000376071 541 ntTSL 5 BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 SORD2P-201ENST00000558556 1069 ntBASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 AC242376.1-201ENST00000559033 726 ntBASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 NAT9-211ENST00000580632 799 ntTSL 3 BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC60Q8IWA6 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC60Q8IWA6 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms