Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 CICP6-201ENST00000457191 2729 ntBASIC19.53■□□□□ 0.72
NPHP3Q7Z494 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP3Q7Z494 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP3Q7Z494 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP3Q7Z494 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC19.53■□□□□ 0.72
NPHP3Q7Z494 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP3Q7Z494 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP3Q7Z494 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
NPHP3Q7Z494 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP3Q7Z494 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP3Q7Z494 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC19.53■□□□□ 0.72
NPHP3Q7Z494 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPHP3Q7Z494 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
NPHP3Q7Z494 AC015688.4-201ENST00000580780 1647 ntBASIC19.52■□□□□ 0.72
NPHP3Q7Z494 GEMIN8P4-201ENST00000380526 729 ntBASIC19.52■□□□□ 0.72
NPHP3Q7Z494 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC19.52■□□□□ 0.72
NPHP3Q7Z494 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC19.52■□□□□ 0.72
NPHP3Q7Z494 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
NPHP3Q7Z494 IGHEP1-201ENST00000521393 651 ntBASIC19.52■□□□□ 0.72
NPHP3Q7Z494 EMC4-208ENST00000559078 599 ntTSL 3 BASIC19.52■□□□□ 0.72
NPHP3Q7Z494 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC19.52■□□□□ 0.72
NPHP3Q7Z494 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC19.52■□□□□ 0.72
NPHP3Q7Z494 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
NPHP3Q7Z494 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
NPHP3Q7Z494 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
NPHP3Q7Z494 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
NPHP3Q7Z494 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
NPHP3Q7Z494 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
NPHP3Q7Z494 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC19.52■□□□□ 0.72
NPHP3Q7Z494 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
NPHP3Q7Z494 LTF-203ENST00000426532 2494 ntTSL 2 BASIC19.52■□□□□ 0.72
NPHP3Q7Z494 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
NPHP3Q7Z494 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
NPHP3Q7Z494 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
NPHP3Q7Z494 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
NPHP3Q7Z494 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
NPHP3Q7Z494 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC19.52■□□□□ 0.72
NPHP3Q7Z494 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
NPHP3Q7Z494 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
NPHP3Q7Z494 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC19.52■□□□□ 0.71
NPHP3Q7Z494 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.71
NPHP3Q7Z494 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.71
NPHP3Q7Z494 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC19.52■□□□□ 0.71
NPHP3Q7Z494 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 PIFO-201ENST00000369737 746 ntTSL 2 BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 PSAT1P2-201ENST00000426107 972 ntBASIC19.51■□□□□ 0.71
NPHP3Q7Z494 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 CHCHD2P2-201ENST00000503744 321 ntBASIC19.51■□□□□ 0.71
NPHP3Q7Z494 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 OSMR-AS1-204ENST00000636516 850 ntTSL 5 BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 AL162727.3-201ENST00000635661 2787 ntBASIC19.51■□□□□ 0.71
NPHP3Q7Z494 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 AC092570.1-201ENST00000414446 469 ntBASIC19.51■□□□□ 0.71
NPHP3Q7Z494 AC004522.1-201ENST00000419978 654 ntBASIC19.51■□□□□ 0.71
NPHP3Q7Z494 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 AC023141.7-201ENST00000430646 407 ntBASIC19.51■□□□□ 0.71
NPHP3Q7Z494 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC19.51■□□□□ 0.71
NPHP3Q7Z494 AL009176.1-201ENST00000607876 650 ntBASIC19.51■□□□□ 0.71
NPHP3Q7Z494 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC19.5■□□□□ 0.71
NPHP3Q7Z494 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms