Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
RHBDL3P58872 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RHBDL3P58872 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RHBDL3P58872 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
RHBDL3P58872 TPO-203ENST00000346956 2923 ntTSL 5 BASIC17.14■□□□□ 0.33
RHBDL3P58872 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC17.13■□□□□ 0.33
RHBDL3P58872 LINC01815-202ENST00000641468 1409 ntBASIC17.13■□□□□ 0.33
RHBDL3P58872 GSN-209ENST00000449733 2702 ntTSL 2 BASIC17.13■□□□□ 0.33
RHBDL3P58872 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RHBDL3P58872 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC17.13■□□□□ 0.33
RHBDL3P58872 AC011498.7-201ENST00000624986 2027 ntBASIC17.13■□□□□ 0.33
RHBDL3P58872 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RHBDL3P58872 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC17.13■□□□□ 0.33
RHBDL3P58872 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RHBDL3P58872 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
RHBDL3P58872 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC17.13■□□□□ 0.33
RHBDL3P58872 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
RHBDL3P58872 FES-203ENST00000394302 2133 ntTSL 5 BASIC17.13■□□□□ 0.33
RHBDL3P58872 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC17.13■□□□□ 0.33
RHBDL3P58872 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
RHBDL3P58872 PFN2-202ENST00000423691 911 ntTSL 2 BASIC17.13■□□□□ 0.33
RHBDL3P58872 PARP8-206ENST00000503665 572 ntTSL 4 BASIC17.13■□□□□ 0.33
RHBDL3P58872 ALG1L13P-202ENST00000519320 584 ntBASIC17.13■□□□□ 0.33
RHBDL3P58872 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC17.13■□□□□ 0.33
RHBDL3P58872 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
RHBDL3P58872 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC17.13■□□□□ 0.33
RHBDL3P58872 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC17.13■□□□□ 0.33
RHBDL3P58872 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RHBDL3P58872 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RHBDL3P58872 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RHBDL3P58872 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC17.13■□□□□ 0.33
RHBDL3P58872 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RHBDL3P58872 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC17.13■□□□□ 0.33
RHBDL3P58872 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
RHBDL3P58872 CCT8L1P-201ENST00000465400 1674 ntBASIC17.13■□□□□ 0.33
RHBDL3P58872 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RHBDL3P58872 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
RHBDL3P58872 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
RHBDL3P58872 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
RHBDL3P58872 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC17.13■□□□□ 0.33
RHBDL3P58872 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
RHBDL3P58872 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RHBDL3P58872 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
RHBDL3P58872 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
RHBDL3P58872 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC17.12■□□□□ 0.33
RHBDL3P58872 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
RHBDL3P58872 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
RHBDL3P58872 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RHBDL3P58872 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC17.12■□□□□ 0.33
RHBDL3P58872 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC17.12■□□□□ 0.33
RHBDL3P58872 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC17.12■□□□□ 0.33
RHBDL3P58872 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC17.12■□□□□ 0.33
RHBDL3P58872 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
RHBDL3P58872 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
RHBDL3P58872 RPL7P35-201ENST00000446943 740 ntBASIC17.12■□□□□ 0.33
RHBDL3P58872 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC17.12■□□□□ 0.33
RHBDL3P58872 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC17.12■□□□□ 0.33
RHBDL3P58872 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
RHBDL3P58872 MT3-203ENST00000565838 421 ntTSL 3 BASIC17.12■□□□□ 0.33
RHBDL3P58872 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC17.12■□□□□ 0.33
RHBDL3P58872 MIR4649-201ENST00000582839 64 ntBASIC17.12■□□□□ 0.33
RHBDL3P58872 AC009145.4-201ENST00000625119 1294 ntBASIC17.12■□□□□ 0.33
RHBDL3P58872 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
RHBDL3P58872 MYB-242ENST00000618728 3545 ntTSL 5 BASIC17.12■□□□□ 0.33
RHBDL3P58872 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
RHBDL3P58872 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
RHBDL3P58872 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
RHBDL3P58872 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC17.12■□□□□ 0.33
RHBDL3P58872 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
RHBDL3P58872 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
RHBDL3P58872 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC17.12■□□□□ 0.33
RHBDL3P58872 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
RHBDL3P58872 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC17.12■□□□□ 0.33
RHBDL3P58872 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
RHBDL3P58872 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC17.12■□□□□ 0.33
RHBDL3P58872 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC17.12■□□□□ 0.33
RHBDL3P58872 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RHBDL3P58872 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC17.11■□□□□ 0.33
RHBDL3P58872 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC17.11■□□□□ 0.33
RHBDL3P58872 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
RHBDL3P58872 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RHBDL3P58872 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
RHBDL3P58872 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
RHBDL3P58872 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RHBDL3P58872 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
RHBDL3P58872 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RHBDL3P58872 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC17.11■□□□□ 0.33
RHBDL3P58872 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC17.11■□□□□ 0.33
RHBDL3P58872 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
RHBDL3P58872 HLA-DMA-203ENST00000395305 777 ntBASIC17.11■□□□□ 0.33
RHBDL3P58872 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC17.11■□□□□ 0.33
RHBDL3P58872 TPT1P11-201ENST00000458482 498 ntBASIC17.11■□□□□ 0.33
RHBDL3P58872 RN7SL8P-201ENST00000461771 266 ntBASIC17.11■□□□□ 0.33
RHBDL3P58872 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC17.11■□□□□ 0.33
RHBDL3P58872 NEU3-207ENST00000534628 746 ntTSL 2 BASIC17.11■□□□□ 0.33
RHBDL3P58872 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
RHBDL3P58872 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC17.11■□□□□ 0.33
RHBDL3P58872 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
RHBDL3P58872 AC005041.3-201ENST00000606287 649 ntBASIC17.11■□□□□ 0.33
RHBDL3P58872 AC005618.3-201ENST00000624928 458 ntBASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms