Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 CFL1-206ENST00000527344 962 ntTSL 2 BASIC15.8■□□□□ 0.12
VCPP55072 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC15.8■□□□□ 0.12
VCPP55072 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VCPP55072 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
VCPP55072 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC15.8■□□□□ 0.12
VCPP55072 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC15.8■□□□□ 0.12
VCPP55072 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC15.8■□□□□ 0.12
VCPP55072 AF254983.2-201ENST00000612331 135 ntBASIC15.8■□□□□ 0.12
VCPP55072 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC15.8■□□□□ 0.12
VCPP55072 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC15.8■□□□□ 0.12
VCPP55072 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VCPP55072 INTS4P1-203ENST00000641008 3683 ntBASIC15.8■□□□□ 0.12
VCPP55072 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VCPP55072 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VCPP55072 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
VCPP55072 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VCPP55072 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VCPP55072 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VCPP55072 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VCPP55072 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VCPP55072 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
VCPP55072 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
VCPP55072 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC15.8■□□□□ 0.12
VCPP55072 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VCPP55072 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
VCPP55072 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC15.8■□□□□ 0.12
VCPP55072 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VCPP55072 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
VCPP55072 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VCPP55072 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC15.79■□□□□ 0.12
VCPP55072 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VCPP55072 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC15.79■□□□□ 0.12
VCPP55072 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VCPP55072 MPI-203ENST00000535694 1523 ntTSL 2 BASIC15.79■□□□□ 0.12
VCPP55072 LRRC59-203ENST00000576448 1531 ntBASIC15.79■□□□□ 0.12
VCPP55072 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC15.79■□□□□ 0.12
VCPP55072 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC15.79■□□□□ 0.12
VCPP55072 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC15.79■□□□□ 0.12
VCPP55072 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VCPP55072 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
VCPP55072 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
VCPP55072 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VCPP55072 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VCPP55072 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC15.79■□□□□ 0.12
VCPP55072 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
VCPP55072 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VCPP55072 ACTBP8-201ENST00000403258 1108 ntBASIC15.79■□□□□ 0.12
VCPP55072 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC15.79■□□□□ 0.12
VCPP55072 AL627389.1-201ENST00000413508 1182 ntBASIC15.79■□□□□ 0.12
VCPP55072 PARVG-202ENST00000415224 999 ntTSL 2 BASIC15.79■□□□□ 0.12
VCPP55072 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC15.79■□□□□ 0.12
VCPP55072 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
VCPP55072 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC15.79■□□□□ 0.12
VCPP55072 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
VCPP55072 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
VCPP55072 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
VCPP55072 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VCPP55072 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VCPP55072 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
VCPP55072 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC15.79■□□□□ 0.12
VCPP55072 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
VCPP55072 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VCPP55072 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
VCPP55072 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VCPP55072 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VCPP55072 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VCPP55072 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VCPP55072 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VCPP55072 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VCPP55072 AC113367.3-201ENST00000508316 1912 ntBASIC15.78■□□□□ 0.12
VCPP55072 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VCPP55072 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VCPP55072 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VCPP55072 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VCPP55072 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
VCPP55072 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VCPP55072 AL360270.3-201ENST00000609118 1348 ntBASIC15.78■□□□□ 0.12
VCPP55072 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VCPP55072 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
VCPP55072 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
VCPP55072 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VCPP55072 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC15.78■□□□□ 0.12
VCPP55072 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
VCPP55072 SMS-201ENST00000379404 1174 ntTSL 3 BASIC15.78■□□□□ 0.12
VCPP55072 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC15.78■□□□□ 0.12
VCPP55072 AC079178.1-201ENST00000420915 656 ntBASIC15.78■□□□□ 0.12
VCPP55072 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VCPP55072 AC234782.1-201ENST00000451950 919 ntBASIC15.78■□□□□ 0.12
VCPP55072 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC15.78■□□□□ 0.12
VCPP55072 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC15.78■□□□□ 0.12
VCPP55072 AC022217.1-201ENST00000521069 738 ntBASIC15.78■□□□□ 0.12
VCPP55072 AC135983.4-201ENST00000564116 1262 ntBASIC15.78■□□□□ 0.12
VCPP55072 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC15.78■□□□□ 0.12
VCPP55072 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VCPP55072 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
VCPP55072 AL645939.5-201ENST00000606834 243 ntBASIC15.78■□□□□ 0.12
VCPP55072 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC15.78■□□□□ 0.12
VCPP55072 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC15.78■□□□□ 0.12
VCPP55072 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
VCPP55072 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms