Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 AF228730.8-201ENST00000642140 221 ntBASIC17.27■□□□□ 0.36
MRE11P49959 C1QTNF1-203ENST00000354124 2714 ntAPPRIS P1 TSL 4 BASIC17.27■□□□□ 0.36
MRE11P49959 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
MRE11P49959 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
MRE11P49959 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC17.27■□□□□ 0.35
MRE11P49959 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC17.27■□□□□ 0.35
MRE11P49959 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC17.27■□□□□ 0.35
MRE11P49959 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
MRE11P49959 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
MRE11P49959 KIAA1614-201ENST00000367587 3309 ntTSL 2 BASIC17.27■□□□□ 0.35
MRE11P49959 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC17.27■□□□□ 0.35
MRE11P49959 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC17.27■□□□□ 0.35
MRE11P49959 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC17.27■□□□□ 0.35
MRE11P49959 MIR497HG-202ENST00000572453 3838 ntBASIC17.27■□□□□ 0.35
MRE11P49959 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
MRE11P49959 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
MRE11P49959 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
MRE11P49959 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
MRE11P49959 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
MRE11P49959 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
MRE11P49959 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
MRE11P49959 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
MRE11P49959 INTS5-201ENST00000330574 3285 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MRE11P49959 TSPEAR-AS1-202ENST00000451035 2108 ntTSL 5 BASIC17.26■□□□□ 0.35
MRE11P49959 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
MRE11P49959 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC17.26■□□□□ 0.35
MRE11P49959 PELP1-201ENST00000301396 3673 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
MRE11P49959 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MRE11P49959 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.35
MRE11P49959 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC17.26■□□□□ 0.35
MRE11P49959 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
MRE11P49959 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC17.26■□□□□ 0.35
MRE11P49959 PPP6R2P1-201ENST00000450880 1275 ntBASIC17.26■□□□□ 0.35
MRE11P49959 AL513480.1-201ENST00000451731 511 ntBASIC17.26■□□□□ 0.35
MRE11P49959 POLE2-203ENST00000553805 496 ntTSL 2 BASIC17.26■□□□□ 0.35
MRE11P49959 THTPA-204ENST00000554970 569 ntTSL 4 BASIC17.26■□□□□ 0.35
MRE11P49959 THTPA-206ENST00000556015 535 ntTSL 3 BASIC17.26■□□□□ 0.35
MRE11P49959 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
MRE11P49959 MIR4259-201ENST00000584466 101 ntBASIC17.26■□□□□ 0.35
MRE11P49959 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC17.26■□□□□ 0.35
MRE11P49959 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC17.26■□□□□ 0.35
MRE11P49959 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
MRE11P49959 RNF220-203ENST00000361799 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MRE11P49959 RNF220-204ENST00000372247 3010 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
MRE11P49959 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
MRE11P49959 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MRE11P49959 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC17.26■□□□□ 0.35
MRE11P49959 SLC52A1-203ENST00000512825 2989 ntTSL 2 BASIC17.26■□□□□ 0.35
MRE11P49959 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MRE11P49959 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
MRE11P49959 PCGF2-202ENST00000611883 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MRE11P49959 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC17.26■□□□□ 0.35
MRE11P49959 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
MRE11P49959 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
MRE11P49959 NLRP7-207ENST00000590030 3209 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
MRE11P49959 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MRE11P49959 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MRE11P49959 AC018665.1-201ENST00000622927 1362 ntBASIC17.26■□□□□ 0.35
MRE11P49959 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
MRE11P49959 FBLIM1-203ENST00000375771 3498 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MRE11P49959 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
MRE11P49959 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MRE11P49959 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC17.25■□□□□ 0.35
MRE11P49959 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MRE11P49959 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC17.25■□□□□ 0.35
MRE11P49959 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MRE11P49959 IFT57-201ENST00000264538 3203 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MRE11P49959 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MRE11P49959 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC17.25■□□□□ 0.35
MRE11P49959 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
MRE11P49959 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC17.25■□□□□ 0.35
MRE11P49959 CCT2-201ENST00000299300 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MRE11P49959 AC138969.2-201ENST00000532739 9932 ntBASIC17.25■□□□□ 0.35
MRE11P49959 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC17.25■□□□□ 0.35
MRE11P49959 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MRE11P49959 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
MRE11P49959 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC17.25■□□□□ 0.35
MRE11P49959 RN7SL752P-201ENST00000463779 287 ntBASIC17.25■□□□□ 0.35
MRE11P49959 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC17.25■□□□□ 0.35
MRE11P49959 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC17.25■□□□□ 0.35
MRE11P49959 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC17.25■□□□□ 0.35
MRE11P49959 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC17.25■□□□□ 0.35
MRE11P49959 AC140912.1-201ENST00000577171 1054 ntBASIC17.25■□□□□ 0.35
MRE11P49959 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
MRE11P49959 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
MRE11P49959 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MRE11P49959 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
MRE11P49959 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MRE11P49959 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MRE11P49959 TET3-201ENST00000305799 5174 ntTSL 5 BASIC17.25■□□□□ 0.35
MRE11P49959 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MRE11P49959 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
MRE11P49959 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MRE11P49959 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MRE11P49959 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
MRE11P49959 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
MRE11P49959 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MRE11P49959 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MRE11P49959 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC17.25■□□□□ 0.35
MRE11P49959 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms