Protein–RNA interactions for Protein: P49458

SRP9, Signal recognition particle 9 kDa protein, humanhuman

Known RBP Predictions only

Length 86 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP9P49458 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
SRP9P49458 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SRP9P49458 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC13.15□□□□□ -0.3
SRP9P49458 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SRP9P49458 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC13.15□□□□□ -0.3
SRP9P49458 INTS4P2-202ENST00000614726 2019 ntBASIC13.15□□□□□ -0.3
SRP9P49458 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
SRP9P49458 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC13.15□□□□□ -0.31
SRP9P49458 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC13.14□□□□□ -0.31
SRP9P49458 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SRP9P49458 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC13.14□□□□□ -0.31
SRP9P49458 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SRP9P49458 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SRP9P49458 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
SRP9P49458 OFD1-202ENST00000380550 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
SRP9P49458 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SRP9P49458 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SRP9P49458 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SRP9P49458 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SRP9P49458 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
SRP9P49458 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SRP9P49458 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SRP9P49458 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC13.14□□□□□ -0.31
SRP9P49458 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SRP9P49458 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC13.14□□□□□ -0.31
SRP9P49458 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SRP9P49458 REXO1L4P-201ENST00000605109 1937 ntBASIC13.14□□□□□ -0.31
SRP9P49458 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SRP9P49458 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SRP9P49458 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC13.14□□□□□ -0.31
SRP9P49458 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SRP9P49458 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SRP9P49458 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SRP9P49458 AC098614.1-201ENST00000368528 745 ntBASIC13.14□□□□□ -0.31
SRP9P49458 SOCS2P1-201ENST00000417727 557 ntBASIC13.14□□□□□ -0.31
SRP9P49458 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC13.14□□□□□ -0.31
SRP9P49458 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
SRP9P49458 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
SRP9P49458 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC13.14□□□□□ -0.31
SRP9P49458 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC13.14□□□□□ -0.31
SRP9P49458 VDAC1P7-201ENST00000462417 847 ntBASIC13.14□□□□□ -0.31
SRP9P49458 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC13.14□□□□□ -0.31
SRP9P49458 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC13.14□□□□□ -0.31
SRP9P49458 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC13.14□□□□□ -0.31
SRP9P49458 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC13.14□□□□□ -0.31
SRP9P49458 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC13.14□□□□□ -0.31
SRP9P49458 INO80C-210ENST00000590757 595 ntTSL 2 BASIC13.14□□□□□ -0.31
SRP9P49458 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC13.14□□□□□ -0.31
SRP9P49458 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC13.14□□□□□ -0.31
SRP9P49458 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
SRP9P49458 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SRP9P49458 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
SRP9P49458 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SRP9P49458 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SRP9P49458 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC13.14□□□□□ -0.31
SRP9P49458 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
SRP9P49458 HAL-202ENST00000538703 2637 ntTSL 2 BASIC13.14□□□□□ -0.31
SRP9P49458 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SRP9P49458 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC13.14□□□□□ -0.31
SRP9P49458 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SRP9P49458 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SRP9P49458 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
SRP9P49458 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC13.14□□□□□ -0.31
SRP9P49458 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SRP9P49458 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC13.14□□□□□ -0.31
SRP9P49458 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
SRP9P49458 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC13.14□□□□□ -0.31
SRP9P49458 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
SRP9P49458 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
SRP9P49458 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SRP9P49458 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SRP9P49458 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
SRP9P49458 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
SRP9P49458 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
SRP9P49458 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
SRP9P49458 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SRP9P49458 CTBP1-AS2-206ENST00000581398 5652 ntBASIC13.13□□□□□ -0.31
SRP9P49458 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
SRP9P49458 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
SRP9P49458 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
SRP9P49458 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SRP9P49458 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
SRP9P49458 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
SRP9P49458 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC13.13□□□□□ -0.31
SRP9P49458 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SRP9P49458 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SRP9P49458 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SRP9P49458 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC13.13□□□□□ -0.31
SRP9P49458 AL139385.1-201ENST00000611744 3272 ntBASIC13.13□□□□□ -0.31
SRP9P49458 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
SRP9P49458 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SRP9P49458 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SRP9P49458 GOLGA8VP-201ENST00000559009 1798 ntBASIC13.13□□□□□ -0.31
SRP9P49458 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SRP9P49458 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
SRP9P49458 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SRP9P49458 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SRP9P49458 CALY-203ENST00000368558 825 ntTSL 5 BASIC13.13□□□□□ -0.31
SRP9P49458 C1QBPP1-201ENST00000400117 770 ntBASIC13.13□□□□□ -0.31
SRP9P49458 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms