Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
BRCA1P38398 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
BRCA1P38398 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
BRCA1P38398 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
BRCA1P38398 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
BRCA1P38398 RFX8-201ENST00000428343 1686 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
BRCA1P38398 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
BRCA1P38398 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.16■□□□□ 0.34
BRCA1P38398 AL391005.1-201ENST00000623953 2435 ntBASIC17.16■□□□□ 0.34
BRCA1P38398 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
BRCA1P38398 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC17.16■□□□□ 0.34
BRCA1P38398 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
BRCA1P38398 CELA3A-202ENST00000374663 649 ntTSL 2 BASIC17.16■□□□□ 0.34
BRCA1P38398 MIR1226-201ENST00000408658 75 ntBASIC17.16■□□□□ 0.34
BRCA1P38398 AL513165.1-201ENST00000413915 289 ntTSL 3 BASIC17.16■□□□□ 0.34
BRCA1P38398 AL359092.2-201ENST00000423330 585 ntBASIC17.16■□□□□ 0.34
BRCA1P38398 AC010086.2-201ENST00000428616 226 ntBASIC17.16■□□□□ 0.34
BRCA1P38398 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC17.16■□□□□ 0.34
BRCA1P38398 KRT19P4-201ENST00000443208 943 ntBASIC17.16■□□□□ 0.34
BRCA1P38398 IDH3A-213ENST00000559205 566 ntTSL 4 BASIC17.16■□□□□ 0.34
BRCA1P38398 AL031710.1-201ENST00000570022 468 ntTSL 2 BASIC17.16■□□□□ 0.34
BRCA1P38398 CLPP-205ENST00000596605 646 ntTSL 2 BASIC17.16■□□□□ 0.34
BRCA1P38398 ERAS-202ENST00000636362 826 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
BRCA1P38398 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
BRCA1P38398 ZNF143-202ENST00000396597 1954 ntTSL 2 BASIC17.16■□□□□ 0.34
BRCA1P38398 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC17.16■□□□□ 0.34
BRCA1P38398 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
BRCA1P38398 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
BRCA1P38398 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
BRCA1P38398 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
BRCA1P38398 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
BRCA1P38398 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
BRCA1P38398 PHKG1-201ENST00000297373 1431 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
BRCA1P38398 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC17.15■□□□□ 0.34
BRCA1P38398 AC026786.1-201ENST00000540096 1374 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
BRCA1P38398 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
BRCA1P38398 NR1I3-201ENST00000367979 1074 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
BRCA1P38398 NR1I3-207ENST00000367985 1074 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
BRCA1P38398 JPT2-203ENST00000382711 894 ntTSL 4 BASIC17.15■□□□□ 0.34
BRCA1P38398 MIR632-201ENST00000385193 94 ntBASIC17.15■□□□□ 0.34
BRCA1P38398 YY1P2-201ENST00000438766 948 ntBASIC17.15■□□□□ 0.34
BRCA1P38398 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC17.15■□□□□ 0.34
BRCA1P38398 NR1I3-225ENST00000508387 634 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
BRCA1P38398 OR52V1P-201ENST00000515557 898 ntBASIC17.15■□□□□ 0.34
BRCA1P38398 AP003043.1-201ENST00000527804 547 ntTSL 4 BASIC17.15■□□□□ 0.34
BRCA1P38398 MIR5091-201ENST00000578707 93 ntBASIC17.15■□□□□ 0.34
BRCA1P38398 RN7SL300P-201ENST00000582522 318 ntBASIC17.15■□□□□ 0.34
BRCA1P38398 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC17.15■□□□□ 0.34
BRCA1P38398 LINC02498-201ENST00000635390 1065 ntTSL 5 BASIC17.15■□□□□ 0.34
BRCA1P38398 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC17.15■□□□□ 0.34
BRCA1P38398 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC17.15■□□□□ 0.34
BRCA1P38398 AC020763.4-201ENST00000623414 4170 ntBASIC17.15■□□□□ 0.34
BRCA1P38398 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
BRCA1P38398 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
BRCA1P38398 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
BRCA1P38398 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
BRCA1P38398 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC17.15■□□□□ 0.34
BRCA1P38398 AC079328.2-201ENST00000561241 3354 ntBASIC17.15■□□□□ 0.34
BRCA1P38398 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
BRCA1P38398 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
BRCA1P38398 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
BRCA1P38398 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
BRCA1P38398 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
BRCA1P38398 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
BRCA1P38398 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC17.14■□□□□ 0.34
BRCA1P38398 TUBAL3-201ENST00000380419 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
BRCA1P38398 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
BRCA1P38398 CA2-201ENST00000285379 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
BRCA1P38398 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
BRCA1P38398 AL359649.1-202ENST00000375713 443 ntTSL 5 BASIC17.14■□□□□ 0.33
BRCA1P38398 RN7SKP212-201ENST00000410851 328 ntBASIC17.14■□□□□ 0.33
BRCA1P38398 SNHG14-201ENST00000414175 610 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
BRCA1P38398 COQ10BP2-201ENST00000513804 724 ntBASIC17.14■□□□□ 0.33
BRCA1P38398 CDK7-211ENST00000514676 1164 ntTSL 5 BASIC17.14■□□□□ 0.33
BRCA1P38398 RNA5SP288-201ENST00000516075 93 ntBASIC17.14■□□□□ 0.33
BRCA1P38398 AC022784.6-202ENST00000523246 674 ntTSL 5 BASIC17.14■□□□□ 0.33
BRCA1P38398 C12orf73-204ENST00000546819 582 ntTSL 4 BASIC17.14■□□□□ 0.33
BRCA1P38398 SULT1A3-206ENST00000563322 906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
BRCA1P38398 AC009065.4-201ENST00000563734 543 ntTSL 3 BASIC17.14■□□□□ 0.33
BRCA1P38398 SULT1A4-204ENST00000565290 906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
BRCA1P38398 AC026470.4-201ENST00000565812 308 ntTSL 3 BASIC17.14■□□□□ 0.33
BRCA1P38398 USE1-207ENST00000596136 637 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
BRCA1P38398 AC008982.2-201ENST00000600473 493 ntTSL 5 BASIC17.14■□□□□ 0.33
BRCA1P38398 AC011483.3-201ENST00000601506 826 ntTSL 3 BASIC17.14■□□□□ 0.33
BRCA1P38398 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
BRCA1P38398 HMOX2-201ENST00000219700 1621 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
BRCA1P38398 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC17.14■□□□□ 0.33
BRCA1P38398 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
BRCA1P38398 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
BRCA1P38398 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
BRCA1P38398 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
BRCA1P38398 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
BRCA1P38398 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
BRCA1P38398 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC17.14■□□□□ 0.33
BRCA1P38398 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
BRCA1P38398 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
BRCA1P38398 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
BRCA1P38398 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
BRCA1P38398 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
BRCA1P38398 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms