Protein–RNA interactions for Protein: P31275

HOXC12, Homeobox protein Hox-C12, humanhuman

Predictions only

Length 282 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC12P31275 POLL-206ENST00000370172 2308 ntTSL 2 BASIC13.14□□□□□ -0.31
HOXC12P31275 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC13.14□□□□□ -0.31
HOXC12P31275 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HOXC12P31275 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXC12P31275 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXC12P31275 SUCO-202ENST00000367723 5916 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HOXC12P31275 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXC12P31275 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC13.14□□□□□ -0.31
HOXC12P31275 PKP1-203ENST00000367324 5384 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXC12P31275 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
HOXC12P31275 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
HOXC12P31275 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
HOXC12P31275 CLUHP2-201ENST00000426660 1303 ntBASIC13.13□□□□□ -0.31
HOXC12P31275 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HOXC12P31275 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
HOXC12P31275 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HOXC12P31275 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HOXC12P31275 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC13.13□□□□□ -0.31
HOXC12P31275 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC13.13□□□□□ -0.31
HOXC12P31275 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC13.13□□□□□ -0.31
HOXC12P31275 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HOXC12P31275 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXC12P31275 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
HOXC12P31275 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
HOXC12P31275 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HOXC12P31275 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXC12P31275 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXC12P31275 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC13.13□□□□□ -0.31
HOXC12P31275 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXC12P31275 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXC12P31275 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXC12P31275 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC13.13□□□□□ -0.31
HOXC12P31275 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HOXC12P31275 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HOXC12P31275 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC13.13□□□□□ -0.31
HOXC12P31275 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXC12P31275 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
HOXC12P31275 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC13.13□□□□□ -0.31
HOXC12P31275 POM121L8P-201ENST00000417732 1281 ntBASIC13.13□□□□□ -0.31
HOXC12P31275 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
HOXC12P31275 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC13.13□□□□□ -0.31
HOXC12P31275 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC13.13□□□□□ -0.31
HOXC12P31275 POM121L9P-203ENST00000441984 1285 ntBASIC13.13□□□□□ -0.31
HOXC12P31275 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC13.13□□□□□ -0.31
HOXC12P31275 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC13.13□□□□□ -0.31
HOXC12P31275 RN7SL713P-201ENST00000582127 302 ntBASIC13.13□□□□□ -0.31
HOXC12P31275 EEF1DP1-201ENST00000585891 896 ntBASIC13.13□□□□□ -0.31
HOXC12P31275 AC138627.1-207ENST00000641560 1006 ntBASIC13.13□□□□□ -0.31
HOXC12P31275 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HOXC12P31275 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXC12P31275 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXC12P31275 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC13.13□□□□□ -0.31
HOXC12P31275 MIR9-3HG-201ENST00000536780 4778 ntTSL 3 BASIC13.13□□□□□ -0.31
HOXC12P31275 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC13.13□□□□□ -0.31
HOXC12P31275 AC126177.1-201ENST00000547829 2218 ntBASIC13.13□□□□□ -0.31
HOXC12P31275 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC13.13□□□□□ -0.31
HOXC12P31275 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC13.13□□□□□ -0.31
HOXC12P31275 MPP2-219ENST00000612133 4938 ntTSL 5 BASIC13.13□□□□□ -0.31
HOXC12P31275 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
HOXC12P31275 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXC12P31275 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC13.13□□□□□ -0.31
HOXC12P31275 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXC12P31275 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXC12P31275 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXC12P31275 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC13.13□□□□□ -0.31
HOXC12P31275 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXC12P31275 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
HOXC12P31275 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HOXC12P31275 ADCYAP1R1-201ENST00000304166 6487 ntAPPRIS P3 TSL 2 BASIC13.13□□□□□ -0.31
HOXC12P31275 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC13.13□□□□□ -0.31
HOXC12P31275 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC13.13□□□□□ -0.31
HOXC12P31275 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
HOXC12P31275 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
HOXC12P31275 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXC12P31275 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC13.12□□□□□ -0.31
HOXC12P31275 SALL4P5-201ENST00000419001 1760 ntBASIC13.12□□□□□ -0.31
HOXC12P31275 ZNF318-201ENST00000361428 8006 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXC12P31275 CNP-202ENST00000393892 5217 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXC12P31275 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
HOXC12P31275 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXC12P31275 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC13.12□□□□□ -0.31
HOXC12P31275 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXC12P31275 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXC12P31275 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC13.12□□□□□ -0.31
HOXC12P31275 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
HOXC12P31275 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXC12P31275 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXC12P31275 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC13.12□□□□□ -0.31
HOXC12P31275 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC13.12□□□□□ -0.31
HOXC12P31275 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXC12P31275 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXC12P31275 NCOA7-203ENST00000392477 6457 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXC12P31275 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC13.12□□□□□ -0.31
HOXC12P31275 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXC12P31275 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
HOXC12P31275 HNRNPA1P32-201ENST00000396326 963 ntBASIC13.12□□□□□ -0.31
HOXC12P31275 AC079178.1-201ENST00000420915 656 ntBASIC13.12□□□□□ -0.31
HOXC12P31275 PTPA-218ENST00000435132 618 ntTSL 2 BASIC13.12□□□□□ -0.31
HOXC12P31275 AC253536.4-201ENST00000440539 267 ntBASIC13.12□□□□□ -0.31
HOXC12P31275 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC13.12□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms