Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC19.15■□□□□ 0.66
HOXC9P31274 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC19.15■□□□□ 0.66
HOXC9P31274 AC026410.1-201ENST00000507366 1101 ntBASIC19.15■□□□□ 0.66
HOXC9P31274 ALG1L6P-201ENST00000515248 758 ntBASIC19.15■□□□□ 0.66
HOXC9P31274 OR5BD1P-201ENST00000532527 817 ntBASIC19.15■□□□□ 0.66
HOXC9P31274 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC19.15■□□□□ 0.66
HOXC9P31274 MIR5196-201ENST00000578146 115 ntBASIC19.15■□□□□ 0.66
HOXC9P31274 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC19.15■□□□□ 0.66
HOXC9P31274 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
HOXC9P31274 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HOXC9P31274 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HOXC9P31274 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HOXC9P31274 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC19.15■□□□□ 0.66
HOXC9P31274 USP35-204ENST00000530267 2419 ntTSL 2 BASIC19.15■□□□□ 0.66
HOXC9P31274 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HOXC9P31274 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
HOXC9P31274 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HOXC9P31274 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HOXC9P31274 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HOXC9P31274 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
HOXC9P31274 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
HOXC9P31274 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
HOXC9P31274 AC126177.1-201ENST00000547829 2218 ntBASIC19.15■□□□□ 0.66
HOXC9P31274 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
HOXC9P31274 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC19.14■□□□□ 0.66
HOXC9P31274 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC19.14■□□□□ 0.66
HOXC9P31274 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
HOXC9P31274 MTHFR-210ENST00000641407 2387 ntBASIC19.14■□□□□ 0.66
HOXC9P31274 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.66
HOXC9P31274 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
HOXC9P31274 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
HOXC9P31274 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
HOXC9P31274 MARS-233ENST00000628866 2583 ntTSL 5 BASIC19.14■□□□□ 0.65
HOXC9P31274 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
HOXC9P31274 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC19.14■□□□□ 0.65
HOXC9P31274 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC19.14■□□□□ 0.65
HOXC9P31274 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC19.14■□□□□ 0.65
HOXC9P31274 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HOXC9P31274 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HOXC9P31274 BAK1P1-201ENST00000317045 636 ntBASIC19.14■□□□□ 0.65
HOXC9P31274 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC19.14■□□□□ 0.65
HOXC9P31274 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HOXC9P31274 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC19.14■□□□□ 0.65
HOXC9P31274 RGS5-216ENST00000449680 788 ntTSL 3 BASIC19.14■□□□□ 0.65
HOXC9P31274 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC19.14■□□□□ 0.65
HOXC9P31274 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC19.14■□□□□ 0.65
HOXC9P31274 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC19.14■□□□□ 0.65
HOXC9P31274 NAA40-205ENST00000539656 577 ntTSL 4 BASIC19.14■□□□□ 0.65
HOXC9P31274 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC19.14■□□□□ 0.65
HOXC9P31274 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC19.14■□□□□ 0.65
HOXC9P31274 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC19.14■□□□□ 0.65
HOXC9P31274 AC140113.1-201ENST00000603467 169 ntBASIC19.14■□□□□ 0.65
HOXC9P31274 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC19.14■□□□□ 0.65
HOXC9P31274 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HOXC9P31274 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC19.14■□□□□ 0.65
HOXC9P31274 POR-201ENST00000394893 2532 ntTSL 5 BASIC19.14■□□□□ 0.65
HOXC9P31274 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HOXC9P31274 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HOXC9P31274 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC19.14■□□□□ 0.65
HOXC9P31274 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
HOXC9P31274 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HOXC9P31274 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HOXC9P31274 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC19.14■□□□□ 0.65
HOXC9P31274 CROCCP1-201ENST00000426910 5675 ntBASIC19.14■□□□□ 0.65
HOXC9P31274 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
HOXC9P31274 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HOXC9P31274 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC19.13■□□□□ 0.65
HOXC9P31274 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
HOXC9P31274 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
HOXC9P31274 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC19.13■□□□□ 0.65
HOXC9P31274 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC19.13■□□□□ 0.65
HOXC9P31274 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
HOXC9P31274 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
HOXC9P31274 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HOXC9P31274 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HOXC9P31274 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HOXC9P31274 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HOXC9P31274 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC19.13■□□□□ 0.65
HOXC9P31274 CSNK1G2P1-201ENST00000442675 955 ntBASIC19.13■□□□□ 0.65
HOXC9P31274 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
HOXC9P31274 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC19.13■□□□□ 0.65
HOXC9P31274 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HOXC9P31274 RN7SL357P-201ENST00000581065 298 ntBASIC19.13■□□□□ 0.65
HOXC9P31274 AL021707.6-201ENST00000609212 491 ntBASIC19.13■□□□□ 0.65
HOXC9P31274 AC138466.5-201ENST00000624002 808 ntBASIC19.13■□□□□ 0.65
HOXC9P31274 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC19.13■□□□□ 0.65
HOXC9P31274 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HOXC9P31274 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
HOXC9P31274 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HOXC9P31274 USP4-203ENST00000415188 1454 ntTSL 3 BASIC19.13■□□□□ 0.65
HOXC9P31274 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HOXC9P31274 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
HOXC9P31274 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
HOXC9P31274 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HOXC9P31274 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
HOXC9P31274 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HOXC9P31274 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC19.12■□□□□ 0.65
HOXC9P31274 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC19.12■□□□□ 0.65
HOXC9P31274 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC19.12■□□□□ 0.65
HOXC9P31274 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms