Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL5A3P25940 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL5A3P25940 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL5A3P25940 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC17.85■□□□□ 0.45
COL5A3P25940 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC17.85■□□□□ 0.45
COL5A3P25940 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
COL5A3P25940 RPL13AP3-202ENST00000494676 1473 ntBASIC17.84■□□□□ 0.45
COL5A3P25940 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC17.84■□□□□ 0.45
COL5A3P25940 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL5A3P25940 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
COL5A3P25940 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL5A3P25940 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL5A3P25940 GGTLC4P-201ENST00000402176 664 ntBASIC17.84■□□□□ 0.45
COL5A3P25940 PGAM1P11-201ENST00000416729 680 ntBASIC17.84■□□□□ 0.45
COL5A3P25940 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC17.84■□□□□ 0.45
COL5A3P25940 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
COL5A3P25940 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
COL5A3P25940 PES1P2-201ENST00000449745 1735 ntBASIC17.84■□□□□ 0.45
COL5A3P25940 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL5A3P25940 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL5A3P25940 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL5A3P25940 AC010504.1-201ENST00000591311 585 ntTSL 3 BASIC17.84■□□□□ 0.45
COL5A3P25940 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC17.84■□□□□ 0.45
COL5A3P25940 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL5A3P25940 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL5A3P25940 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
COL5A3P25940 MARS-233ENST00000628866 2583 ntTSL 5 BASIC17.84■□□□□ 0.45
COL5A3P25940 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC17.84■□□□□ 0.45
COL5A3P25940 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
COL5A3P25940 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL5A3P25940 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL5A3P25940 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL5A3P25940 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC17.84■□□□□ 0.45
COL5A3P25940 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL5A3P25940 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL5A3P25940 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
COL5A3P25940 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL5A3P25940 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC17.84■□□□□ 0.45
COL5A3P25940 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC17.84■□□□□ 0.45
COL5A3P25940 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL5A3P25940 FCRL6-202ENST00000339348 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL5A3P25940 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL5A3P25940 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
COL5A3P25940 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL5A3P25940 DAD1-201ENST00000250498 731 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL5A3P25940 HCRTR1-201ENST00000373705 1170 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL5A3P25940 LINC00339-202ENST00000416769 1077 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL5A3P25940 MED19-202ENST00000431606 1203 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL5A3P25940 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC17.84■□□□□ 0.45
COL5A3P25940 GULOP-201ENST00000454030 748 ntBASIC17.84■□□□□ 0.45
COL5A3P25940 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL5A3P25940 FAM187B2P-201ENST00000577135 713 ntBASIC17.84■□□□□ 0.45
COL5A3P25940 MIR4746-201ENST00000579802 71 ntBASIC17.84■□□□□ 0.45
COL5A3P25940 AC008735.2-201ENST00000589456 549 ntTSL 5 BASIC17.84■□□□□ 0.45
COL5A3P25940 AC011462.4-201ENST00000616866 449 ntBASIC17.84■□□□□ 0.45
COL5A3P25940 CCL3L3-203ENST00000619989 784 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL5A3P25940 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC17.84■□□□□ 0.45
COL5A3P25940 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.83■□□□□ 0.45
COL5A3P25940 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL5A3P25940 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC17.83■□□□□ 0.45
COL5A3P25940 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL5A3P25940 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL5A3P25940 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL5A3P25940 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL5A3P25940 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL5A3P25940 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC17.83■□□□□ 0.44
COL5A3P25940 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC17.83■□□□□ 0.44
COL5A3P25940 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC17.83■□□□□ 0.44
COL5A3P25940 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL5A3P25940 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC17.83■□□□□ 0.44
COL5A3P25940 UBE2L5P-202ENST00000635918 1513 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
COL5A3P25940 SIRPB3P-201ENST00000340424 1216 ntBASIC17.83■□□□□ 0.44
COL5A3P25940 IFNLR1-203ENST00000374418 674 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL5A3P25940 NQO2-204ENST00000380454 851 ntTSL 2 BASIC17.83■□□□□ 0.44
COL5A3P25940 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC17.83■□□□□ 0.44
COL5A3P25940 COQ10BP2-201ENST00000513804 724 ntBASIC17.83■□□□□ 0.44
COL5A3P25940 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC17.83■□□□□ 0.44
COL5A3P25940 AC074050.2-201ENST00000563338 538 ntTSL 3 BASIC17.83■□□□□ 0.44
COL5A3P25940 AC018846.1-201ENST00000568231 183 ntBASIC17.83■□□□□ 0.44
COL5A3P25940 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC17.83■□□□□ 0.44
COL5A3P25940 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC17.83■□□□□ 0.44
COL5A3P25940 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL5A3P25940 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.83■□□□□ 0.44
COL5A3P25940 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL5A3P25940 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL5A3P25940 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
COL5A3P25940 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A3P25940 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
COL5A3P25940 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC17.82■□□□□ 0.44
COL5A3P25940 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC17.82■□□□□ 0.44
COL5A3P25940 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A3P25940 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC17.82■□□□□ 0.44
COL5A3P25940 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
COL5A3P25940 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
COL5A3P25940 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC17.82■□□□□ 0.44
COL5A3P25940 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A3P25940 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC17.82■□□□□ 0.44
COL5A3P25940 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC17.82■□□□□ 0.44
COL5A3P25940 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL5A3P25940 EEF1DP5-201ENST00000431410 772 ntBASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms