Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 FAM90A23P-201ENST00000400136 1395 ntBASIC17.05■□□□□ 0.32
ERCC3P19447 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC3P19447 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC3P19447 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC3P19447 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC3P19447 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC17.05■□□□□ 0.32
ERCC3P19447 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
ERCC3P19447 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC17.05■□□□□ 0.32
ERCC3P19447 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC3P19447 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC17.05■□□□□ 0.32
ERCC3P19447 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC3P19447 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC17.05■□□□□ 0.32
ERCC3P19447 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC3P19447 AL353637.1-201ENST00000451571 732 ntBASIC17.05■□□□□ 0.32
ERCC3P19447 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC17.05■□□□□ 0.32
ERCC3P19447 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC17.05■□□□□ 0.32
ERCC3P19447 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
ERCC3P19447 RTN3P1-201ENST00000536295 711 ntBASIC17.05■□□□□ 0.32
ERCC3P19447 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC17.05■□□□□ 0.32
ERCC3P19447 AC005962.1-201ENST00000584100 773 ntBASIC17.05■□□□□ 0.32
ERCC3P19447 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC17.05■□□□□ 0.32
ERCC3P19447 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC17.05■□□□□ 0.32
ERCC3P19447 Z98259.2-201ENST00000641583 609 ntBASIC17.05■□□□□ 0.32
ERCC3P19447 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC3P19447 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC3P19447 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC17.05■□□□□ 0.32
ERCC3P19447 RDX-218ENST00000544551 4117 ntTSL 2 BASIC17.05■□□□□ 0.32
ERCC3P19447 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC3P19447 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC3P19447 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
ERCC3P19447 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC3P19447 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC3P19447 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC17.05■□□□□ 0.32
ERCC3P19447 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC3P19447 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC17.05■□□□□ 0.32
ERCC3P19447 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
ERCC3P19447 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC3P19447 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC3P19447 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC3P19447 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC17.05■□□□□ 0.32
ERCC3P19447 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC3P19447 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ERCC3P19447 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ERCC3P19447 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ERCC3P19447 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
ERCC3P19447 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ERCC3P19447 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ERCC3P19447 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC17.04■□□□□ 0.32
ERCC3P19447 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ERCC3P19447 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
ERCC3P19447 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ERCC3P19447 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
ERCC3P19447 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
ERCC3P19447 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC17.04■□□□□ 0.32
ERCC3P19447 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ERCC3P19447 AC006480.2-201ENST00000609770 1337 ntBASIC17.04■□□□□ 0.32
ERCC3P19447 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ERCC3P19447 AC136759.1-202ENST00000530858 2194 ntBASIC17.04■□□□□ 0.32
ERCC3P19447 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ERCC3P19447 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ERCC3P19447 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ERCC3P19447 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ERCC3P19447 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ERCC3P19447 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ERCC3P19447 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
ERCC3P19447 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ERCC3P19447 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
ERCC3P19447 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
ERCC3P19447 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC17.04■□□□□ 0.32
ERCC3P19447 CEP164P1-201ENST00000455142 418 ntBASIC17.04■□□□□ 0.32
ERCC3P19447 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC17.04■□□□□ 0.32
ERCC3P19447 CFL1-214ENST00000534769 758 ntTSL 2 BASIC17.04■□□□□ 0.32
ERCC3P19447 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
ERCC3P19447 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC17.04■□□□□ 0.32
ERCC3P19447 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC17.04■□□□□ 0.32
ERCC3P19447 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ERCC3P19447 PAM16-211ENST00000575848 518 ntTSL 3 BASIC17.04■□□□□ 0.32
ERCC3P19447 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
ERCC3P19447 CDK7-214ENST00000626796 358 ntTSL 5 BASIC17.04■□□□□ 0.32
ERCC3P19447 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC17.04■□□□□ 0.32
ERCC3P19447 RPL35-206ENST00000629845 340 ntTSL 5 BASIC17.04■□□□□ 0.32
ERCC3P19447 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ERCC3P19447 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ERCC3P19447 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ERCC3P19447 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
ERCC3P19447 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ERCC3P19447 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
ERCC3P19447 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
ERCC3P19447 AC126365.1-201ENST00000578585 1514 ntBASIC17.04■□□□□ 0.32
ERCC3P19447 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ERCC3P19447 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC17.04■□□□□ 0.32
ERCC3P19447 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
ERCC3P19447 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ERCC3P19447 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ERCC3P19447 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC17.04■□□□□ 0.32
ERCC3P19447 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
ERCC3P19447 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC17.04■□□□□ 0.32
ERCC3P19447 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ERCC3P19447 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
ERCC3P19447 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms