Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 PRR13-209ENST00000549924 625 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
RAPGEF3O95398 AL359219.1-201ENST00000556311 934 ntBASIC21.4■■□□□ 1.02
RAPGEF3O95398 AC008747.1-201ENST00000592220 442 ntTSL 3 BASIC21.4■■□□□ 1.02
RAPGEF3O95398 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RAPGEF3O95398 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
RAPGEF3O95398 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
RAPGEF3O95398 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RAPGEF3O95398 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
RAPGEF3O95398 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RAPGEF3O95398 GPN3-203ENST00000543199 1604 ntTSL 5 BASIC21.4■■□□□ 1.02
RAPGEF3O95398 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
RAPGEF3O95398 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC21.39■■□□□ 1.02
RAPGEF3O95398 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.02
RAPGEF3O95398 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC21.39■■□□□ 1.02
RAPGEF3O95398 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
RAPGEF3O95398 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
RAPGEF3O95398 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC21.39■■□□□ 1.01
RAPGEF3O95398 CYB5R2-201ENST00000299498 1254 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
RAPGEF3O95398 POLR2G-201ENST00000301788 827 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
RAPGEF3O95398 DBNDD2-207ENST00000372722 1202 ntTSL 3 BASIC21.39■■□□□ 1.01
RAPGEF3O95398 TOMM5-203ENST00000401811 789 ntTSL 2 BASIC21.39■■□□□ 1.01
RAPGEF3O95398 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
RAPGEF3O95398 AC231533.1-201ENST00000416061 925 ntTSL 3 BASIC21.39■■□□□ 1.01
RAPGEF3O95398 AL137026.2-201ENST00000437014 841 ntTSL 2 BASIC21.39■■□□□ 1.01
RAPGEF3O95398 MBP-230ENST00000528160 584 ntTSL 5 BASIC21.39■■□□□ 1.01
RAPGEF3O95398 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC21.39■■□□□ 1.01
RAPGEF3O95398 RN7SL455P-201ENST00000580629 282 ntBASIC21.39■■□□□ 1.01
RAPGEF3O95398 AC016582.2-202ENST00000587765 1094 ntBASIC21.39■■□□□ 1.01
RAPGEF3O95398 PRKACA-208ENST00000589994 1127 ntTSL 2 BASIC21.39■■□□□ 1.01
RAPGEF3O95398 OAZ3-207ENST00000627780 850 ntTSL 5 BASIC21.39■■□□□ 1.01
RAPGEF3O95398 OAZ3-209ENST00000635322 745 ntTSL 5 BASIC21.39■■□□□ 1.01
RAPGEF3O95398 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC21.39■■□□□ 1.01
RAPGEF3O95398 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
RAPGEF3O95398 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC21.39■■□□□ 1.01
RAPGEF3O95398 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
RAPGEF3O95398 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
RAPGEF3O95398 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
RAPGEF3O95398 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
RAPGEF3O95398 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC21.39■■□□□ 1.01
RAPGEF3O95398 AL050341.2-201ENST00000567508 1541 ntBASIC21.39■■□□□ 1.01
RAPGEF3O95398 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC21.39■■□□□ 1.01
RAPGEF3O95398 OR6D1P-202ENST00000641007 5290 ntBASIC21.39■■□□□ 1.01
RAPGEF3O95398 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
RAPGEF3O95398 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
RAPGEF3O95398 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC21.39■■□□□ 1.01
RAPGEF3O95398 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RAPGEF3O95398 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
RAPGEF3O95398 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RAPGEF3O95398 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RAPGEF3O95398 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RAPGEF3O95398 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
RAPGEF3O95398 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
RAPGEF3O95398 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RAPGEF3O95398 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
RAPGEF3O95398 TMEM60-201ENST00000257663 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RAPGEF3O95398 AIFM1-203ENST00000346424 1200 ntTSL 2 BASIC21.38■■□□□ 1.01
RAPGEF3O95398 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RAPGEF3O95398 PMF1-203ENST00000368279 1019 ntTSL 2 BASIC21.38■■□□□ 1.01
RAPGEF3O95398 AP001628.2-201ENST00000420273 784 ntTSL 2 BASIC21.38■■□□□ 1.01
RAPGEF3O95398 AL773545.2-201ENST00000442149 472 ntBASIC21.38■■□□□ 1.01
RAPGEF3O95398 RN7SL578P-201ENST00000477781 283 ntBASIC21.38■■□□□ 1.01
RAPGEF3O95398 AF274856.1-202ENST00000509345 871 ntTSL 4 BASIC21.38■■□□□ 1.01
RAPGEF3O95398 C11orf45-202ENST00000524878 609 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RAPGEF3O95398 TIMM10-202ENST00000525158 530 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
RAPGEF3O95398 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC21.38■■□□□ 1.01
RAPGEF3O95398 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC21.38■■□□□ 1.01
RAPGEF3O95398 LINC01029-202ENST00000578833 366 ntTSL 3 BASIC21.38■■□□□ 1.01
RAPGEF3O95398 AC004231.3-201ENST00000579136 258 ntTSL 3 BASIC21.38■■□□□ 1.01
RAPGEF3O95398 AC254633.1-201ENST00000606790 345 ntBASIC21.38■■□□□ 1.01
RAPGEF3O95398 PSME2-217ENST00000615264 874 ntTSL 5 BASIC21.38■■□□□ 1.01
RAPGEF3O95398 AL513478.2-202ENST00000621949 835 ntTSL 3 BASIC21.38■■□□□ 1.01
RAPGEF3O95398 LINC01588-216ENST00000623502 975 ntTSL 2 BASIC21.38■■□□□ 1.01
RAPGEF3O95398 PSME2-218ENST00000630027 185 ntTSL 3 BASIC21.38■■□□□ 1.01
RAPGEF3O95398 AC245369.7-201ENST00000631386 350 ntBASIC21.38■■□□□ 1.01
RAPGEF3O95398 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
RAPGEF3O95398 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
RAPGEF3O95398 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RAPGEF3O95398 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
RAPGEF3O95398 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RAPGEF3O95398 SF1-209ENST00000433274 2317 ntTSL 2 BASIC21.38■■□□□ 1.01
RAPGEF3O95398 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RAPGEF3O95398 LINC00205-201ENST00000433465 1391 ntTSL 3 BASIC21.37■■□□□ 1.01
RAPGEF3O95398 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RAPGEF3O95398 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
RAPGEF3O95398 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RAPGEF3O95398 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RAPGEF3O95398 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
RAPGEF3O95398 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
RAPGEF3O95398 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC21.37■■□□□ 1.01
RAPGEF3O95398 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC21.37■■□□□ 1.01
RAPGEF3O95398 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RAPGEF3O95398 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC21.37■■□□□ 1.01
RAPGEF3O95398 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC21.37■■□□□ 1.01
RAPGEF3O95398 KIR2DL4-207ENST00000396293 715 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RAPGEF3O95398 AC006328.1-201ENST00000437571 379 ntBASIC21.37■■□□□ 1.01
RAPGEF3O95398 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC21.37■■□□□ 1.01
RAPGEF3O95398 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC21.37■■□□□ 1.01
RAPGEF3O95398 NDUFA3-214ENST00000485876 963 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RAPGEF3O95398 RN7SL605P-201ENST00000577229 281 ntBASIC21.37■■□□□ 1.01
RAPGEF3O95398 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms