Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 RAB43P1-201ENST00000561790 589 ntBASIC17.11■□□□□ 0.33
CDKL5O76039 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CDKL5O76039 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC17.11■□□□□ 0.33
CDKL5O76039 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC17.11■□□□□ 0.33
CDKL5O76039 AL136301.1-201ENST00000615830 422 ntBASIC17.11■□□□□ 0.33
CDKL5O76039 AC027601.3-201ENST00000622907 509 ntBASIC17.11■□□□□ 0.33
CDKL5O76039 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC17.11■□□□□ 0.33
CDKL5O76039 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CDKL5O76039 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CDKL5O76039 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
CDKL5O76039 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CDKL5O76039 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDKL5O76039 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDKL5O76039 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDKL5O76039 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDKL5O76039 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CDKL5O76039 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CDKL5O76039 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC17.11■□□□□ 0.33
CDKL5O76039 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CDKL5O76039 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC17.11■□□□□ 0.33
CDKL5O76039 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
CDKL5O76039 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC17.11■□□□□ 0.33
CDKL5O76039 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL5O76039 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL5O76039 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL5O76039 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL5O76039 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC17.1■□□□□ 0.33
CDKL5O76039 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
CDKL5O76039 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC17.1■□□□□ 0.33
CDKL5O76039 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL5O76039 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL5O76039 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CDKL5O76039 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL5O76039 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL5O76039 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL5O76039 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL5O76039 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL5O76039 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC17.1■□□□□ 0.33
CDKL5O76039 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC17.1■□□□□ 0.33
CDKL5O76039 AC010141.1-201ENST00000411585 623 ntBASIC17.1■□□□□ 0.33
CDKL5O76039 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL5O76039 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL5O76039 CHMP1AP1-201ENST00000445563 662 ntBASIC17.1■□□□□ 0.33
CDKL5O76039 CTBP2P5-201ENST00000454986 1264 ntBASIC17.1■□□□□ 0.33
CDKL5O76039 CICP12-201ENST00000455801 843 ntBASIC17.1■□□□□ 0.33
CDKL5O76039 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
CDKL5O76039 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC17.1■□□□□ 0.33
CDKL5O76039 AC027237.1-201ENST00000560942 655 ntBASIC17.1■□□□□ 0.33
CDKL5O76039 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC17.1■□□□□ 0.33
CDKL5O76039 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC17.1■□□□□ 0.33
CDKL5O76039 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL5O76039 AC136759.1-202ENST00000530858 2194 ntBASIC17.1■□□□□ 0.33
CDKL5O76039 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CDKL5O76039 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL5O76039 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL5O76039 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL5O76039 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL5O76039 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL5O76039 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC17.1■□□□□ 0.33
CDKL5O76039 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL5O76039 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC17.1■□□□□ 0.33
CDKL5O76039 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC17.1■□□□□ 0.33
CDKL5O76039 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC17.1■□□□□ 0.33
CDKL5O76039 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL5O76039 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL5O76039 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL5O76039 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL5O76039 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL5O76039 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC17.1■□□□□ 0.33
CDKL5O76039 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDKL5O76039 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDKL5O76039 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDKL5O76039 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDKL5O76039 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDKL5O76039 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CDKL5O76039 ABR-228ENST00000574437 3196 ntTSL 5 BASIC17.09■□□□□ 0.33
CDKL5O76039 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDKL5O76039 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDKL5O76039 RBM38-204ENST00000371219 760 ntTSL 2 BASIC17.09■□□□□ 0.33
CDKL5O76039 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC17.09■□□□□ 0.33
CDKL5O76039 AC005034.1-201ENST00000426657 489 ntBASIC17.09■□□□□ 0.33
CDKL5O76039 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDKL5O76039 NAA50-208ENST00000497255 789 ntTSL 5 BASIC17.09■□□□□ 0.33
CDKL5O76039 NCK2-206ENST00000522586 490 ntTSL 5 BASIC17.09■□□□□ 0.33
CDKL5O76039 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
CDKL5O76039 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC17.09■□□□□ 0.33
CDKL5O76039 AL512343.1-201ENST00000605837 169 ntBASIC17.09■□□□□ 0.33
CDKL5O76039 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC17.09■□□□□ 0.33
CDKL5O76039 AC008687.7-202ENST00000637404 953 ntBASIC17.09■□□□□ 0.33
CDKL5O76039 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CDKL5O76039 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
CDKL5O76039 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDKL5O76039 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDKL5O76039 AC020910.6-201ENST00000623084 1459 ntBASIC17.09■□□□□ 0.33
CDKL5O76039 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CDKL5O76039 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC17.09■□□□□ 0.33
CDKL5O76039 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CDKL5O76039 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CDKL5O76039 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC17.09■□□□□ 0.33
CDKL5O76039 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms