Protein–RNA interactions for Protein: Q9NQE9

HINT3, Histidine triad nucleotide-binding protein 3, humanhuman

Known RBP Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HINT3Q9NQE9 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HINT3Q9NQE9 AL117328.2-201ENST00000624617 1940 ntBASIC20.55■□□□□ 0.88
HINT3Q9NQE9 AL161729.1-201ENST00000604104 1402 ntBASIC20.55■□□□□ 0.88
HINT3Q9NQE9 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HINT3Q9NQE9 DUSP8P3-201ENST00000399571 1760 ntBASIC20.55■□□□□ 0.88
HINT3Q9NQE9 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC20.55■□□□□ 0.88
HINT3Q9NQE9 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
HINT3Q9NQE9 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
HINT3Q9NQE9 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HINT3Q9NQE9 BHLHE23-202ENST00000612929 1109 ntBASIC20.55■□□□□ 0.88
HINT3Q9NQE9 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HINT3Q9NQE9 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HINT3Q9NQE9 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
HINT3Q9NQE9 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HINT3Q9NQE9 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HINT3Q9NQE9 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HINT3Q9NQE9 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.55■□□□□ 0.88
HINT3Q9NQE9 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HINT3Q9NQE9 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HINT3Q9NQE9 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
HINT3Q9NQE9 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC20.54■□□□□ 0.88
HINT3Q9NQE9 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HINT3Q9NQE9 AL592295.1-201ENST00000400984 884 ntBASIC20.54■□□□□ 0.88
HINT3Q9NQE9 IDNK-203ENST00000405990 629 ntTSL 2 BASIC20.54■□□□□ 0.88
HINT3Q9NQE9 AC139795.1-202ENST00000500444 432 ntBASIC20.54■□□□□ 0.88
HINT3Q9NQE9 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HINT3Q9NQE9 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HINT3Q9NQE9 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HINT3Q9NQE9 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
HINT3Q9NQE9 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
HINT3Q9NQE9 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC20.53■□□□□ 0.88
HINT3Q9NQE9 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HINT3Q9NQE9 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HINT3Q9NQE9 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HINT3Q9NQE9 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
HINT3Q9NQE9 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HINT3Q9NQE9 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HINT3Q9NQE9 SSSCA1-AS1-201ENST00000567594 614 ntBASIC20.53■□□□□ 0.88
HINT3Q9NQE9 AC087393.1-201ENST00000582896 145 ntBASIC20.53■□□□□ 0.88
HINT3Q9NQE9 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC20.53■□□□□ 0.88
HINT3Q9NQE9 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
HINT3Q9NQE9 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
HINT3Q9NQE9 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.53■□□□□ 0.88
HINT3Q9NQE9 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HINT3Q9NQE9 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.53■□□□□ 0.88
HINT3Q9NQE9 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
HINT3Q9NQE9 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HINT3Q9NQE9 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HINT3Q9NQE9 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HINT3Q9NQE9 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
HINT3Q9NQE9 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC20.52■□□□□ 0.88
HINT3Q9NQE9 AC233723.2-201ENST00000623798 2106 ntBASIC20.52■□□□□ 0.88
HINT3Q9NQE9 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.87
HINT3Q9NQE9 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
HINT3Q9NQE9 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
HINT3Q9NQE9 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HINT3Q9NQE9 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
HINT3Q9NQE9 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HINT3Q9NQE9 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
HINT3Q9NQE9 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HINT3Q9NQE9 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC20.51■□□□□ 0.87
HINT3Q9NQE9 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC20.51■□□□□ 0.87
HINT3Q9NQE9 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.51■□□□□ 0.87
HINT3Q9NQE9 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.51■□□□□ 0.87
HINT3Q9NQE9 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HINT3Q9NQE9 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HINT3Q9NQE9 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HINT3Q9NQE9 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HINT3Q9NQE9 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
HINT3Q9NQE9 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
HINT3Q9NQE9 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
HINT3Q9NQE9 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HINT3Q9NQE9 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC20.5■□□□□ 0.87
HINT3Q9NQE9 AC074183.2-201ENST00000623112 922 ntBASIC20.5■□□□□ 0.87
HINT3Q9NQE9 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HINT3Q9NQE9 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
HINT3Q9NQE9 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
HINT3Q9NQE9 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HINT3Q9NQE9 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.5■□□□□ 0.87
HINT3Q9NQE9 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
HINT3Q9NQE9 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HINT3Q9NQE9 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC20.49■□□□□ 0.87
HINT3Q9NQE9 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HINT3Q9NQE9 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
HINT3Q9NQE9 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
HINT3Q9NQE9 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC20.49■□□□□ 0.87
HINT3Q9NQE9 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HINT3Q9NQE9 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
HINT3Q9NQE9 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HINT3Q9NQE9 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
HINT3Q9NQE9 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
HINT3Q9NQE9 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HINT3Q9NQE9 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HINT3Q9NQE9 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HINT3Q9NQE9 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HINT3Q9NQE9 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
HINT3Q9NQE9 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.48■□□□□ 0.87
HINT3Q9NQE9 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HINT3Q9NQE9 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HINT3Q9NQE9 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms