Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC30.97■■■□□ 2.55
ABCA3Q99758 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC30.97■■■□□ 2.55
ABCA3Q99758 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC30.97■■■□□ 2.55
ABCA3Q99758 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
ABCA3Q99758 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC30.96■■■□□ 2.55
ABCA3Q99758 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
ABCA3Q99758 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC30.96■■■□□ 2.55
ABCA3Q99758 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
ABCA3Q99758 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC30.96■■■□□ 2.55
ABCA3Q99758 AC126544.1-201ENST00000580842 1059 ntBASIC30.96■■■□□ 2.55
ABCA3Q99758 MIR6084-201ENST00000622012 110 ntBASIC30.96■■■□□ 2.55
ABCA3Q99758 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC30.96■■■□□ 2.55
ABCA3Q99758 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC30.96■■■□□ 2.55
ABCA3Q99758 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC30.96■■■□□ 2.55
ABCA3Q99758 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
ABCA3Q99758 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
ABCA3Q99758 KRT18P14-201ENST00000534205 1250 ntBASIC30.95■■■□□ 2.55
ABCA3Q99758 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC30.95■■■□□ 2.55
ABCA3Q99758 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
ABCA3Q99758 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC30.95■■■□□ 2.55
ABCA3Q99758 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC30.95■■■□□ 2.55
ABCA3Q99758 AICDA-202ENST00000537228 667 ntTSL 5 BASIC30.95■■■□□ 2.54
ABCA3Q99758 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC30.95■■■□□ 2.54
ABCA3Q99758 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC30.95■■■□□ 2.54
ABCA3Q99758 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
ABCA3Q99758 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC30.94■■■□□ 2.54
ABCA3Q99758 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
ABCA3Q99758 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
ABCA3Q99758 AL358852.1-201ENST00000623174 1268 ntBASIC30.94■■■□□ 2.54
ABCA3Q99758 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC30.94■■■□□ 2.54
ABCA3Q99758 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
ABCA3Q99758 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
ABCA3Q99758 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC30.93■■■□□ 2.54
ABCA3Q99758 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC30.93■■■□□ 2.54
ABCA3Q99758 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
ABCA3Q99758 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC30.93■■■□□ 2.54
ABCA3Q99758 HLA-L-209ENST00000420110 1011 ntBASIC30.92■■■□□ 2.54
ABCA3Q99758 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC30.92■■■□□ 2.54
ABCA3Q99758 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC30.92■■■□□ 2.54
ABCA3Q99758 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
ABCA3Q99758 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC30.91■■■□□ 2.54
ABCA3Q99758 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC30.91■■■□□ 2.54
ABCA3Q99758 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC30.91■■■□□ 2.54
ABCA3Q99758 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC30.91■■■□□ 2.54
ABCA3Q99758 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
ABCA3Q99758 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
ABCA3Q99758 VGF-203ENST00000611537 1622 ntTSL 5 BASIC30.9■■■□□ 2.54
ABCA3Q99758 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC30.9■■■□□ 2.54
ABCA3Q99758 TERF1P2-201ENST00000583350 1212 ntBASIC30.9■■■□□ 2.54
ABCA3Q99758 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC30.9■■■□□ 2.54
ABCA3Q99758 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC30.9■■■□□ 2.54
ABCA3Q99758 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
ABCA3Q99758 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC30.9■■■□□ 2.54
ABCA3Q99758 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC30.9■■■□□ 2.54
ABCA3Q99758 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC30.89■■■□□ 2.54
ABCA3Q99758 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC30.89■■■□□ 2.54
ABCA3Q99758 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC30.89■■■□□ 2.54
ABCA3Q99758 NME4-202ENST00000382940 766 ntTSL 3 BASIC30.89■■■□□ 2.54
ABCA3Q99758 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC30.89■■■□□ 2.54
ABCA3Q99758 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
ABCA3Q99758 NME4-211ENST00000620944 1193 ntTSL 2 BASIC30.89■■■□□ 2.54
ABCA3Q99758 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC30.89■■■□□ 2.54
ABCA3Q99758 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.53
ABCA3Q99758 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC30.88■■■□□ 2.53
ABCA3Q99758 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
ABCA3Q99758 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC30.88■■■□□ 2.53
ABCA3Q99758 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC30.88■■■□□ 2.53
ABCA3Q99758 MIR572-201ENST00000384983 95 ntBASIC30.88■■■□□ 2.53
ABCA3Q99758 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
ABCA3Q99758 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC30.88■■■□□ 2.53
ABCA3Q99758 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC30.88■■■□□ 2.53
ABCA3Q99758 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC30.88■■■□□ 2.53
ABCA3Q99758 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
ABCA3Q99758 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
ABCA3Q99758 GTSE1-AS1-202ENST00000623117 1518 ntBASIC30.87■■■□□ 2.53
ABCA3Q99758 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC30.87■■■□□ 2.53
ABCA3Q99758 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC30.87■■■□□ 2.53
ABCA3Q99758 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
ABCA3Q99758 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
ABCA3Q99758 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC30.87■■■□□ 2.53
ABCA3Q99758 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
ABCA3Q99758 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC30.86■■■□□ 2.53
ABCA3Q99758 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
ABCA3Q99758 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC30.86■■■□□ 2.53
ABCA3Q99758 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
ABCA3Q99758 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC30.86■■■□□ 2.53
ABCA3Q99758 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC30.86■■■□□ 2.53
ABCA3Q99758 AL354811.1-201ENST00000610286 706 ntBASIC30.86■■■□□ 2.53
ABCA3Q99758 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC30.86■■■□□ 2.53
ABCA3Q99758 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC30.86■■■□□ 2.53
ABCA3Q99758 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC30.86■■■□□ 2.53
ABCA3Q99758 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC30.86■■■□□ 2.53
ABCA3Q99758 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC30.86■■■□□ 2.53
ABCA3Q99758 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC30.86■■■□□ 2.53
ABCA3Q99758 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC30.85■■■□□ 2.53
ABCA3Q99758 KRT18P61-201ENST00000585825 1298 ntBASIC30.85■■■□□ 2.53
ABCA3Q99758 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC30.85■■■□□ 2.53
ABCA3Q99758 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC30.85■■■□□ 2.53
ABCA3Q99758 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC30.84■■■□□ 2.53
ABCA3Q99758 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms