Protein–RNA interactions for Protein: Q96JI7

SPG11, Spatacsin, humanhuman

Predictions only

Length 2,443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11Q96JI7 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SPG11Q96JI7 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SPG11Q96JI7 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC19.49■□□□□ 0.71
SPG11Q96JI7 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC19.49■□□□□ 0.71
SPG11Q96JI7 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC19.49■□□□□ 0.71
SPG11Q96JI7 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SPG11Q96JI7 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
SPG11Q96JI7 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SPG11Q96JI7 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
SPG11Q96JI7 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.49■□□□□ 0.71
SPG11Q96JI7 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.49■□□□□ 0.71
SPG11Q96JI7 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SPG11Q96JI7 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SPG11Q96JI7 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SPG11Q96JI7 AC066615.1-201ENST00000640911 628 ntBASIC19.48■□□□□ 0.71
SPG11Q96JI7 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SPG11Q96JI7 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC19.48■□□□□ 0.71
SPG11Q96JI7 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC19.48■□□□□ 0.71
SPG11Q96JI7 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SPG11Q96JI7 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19.47■□□□□ 0.71
SPG11Q96JI7 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC19.47■□□□□ 0.71
SPG11Q96JI7 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SPG11Q96JI7 SHF-208ENST00000560734 1731 ntTSL 3 BASIC19.47■□□□□ 0.71
SPG11Q96JI7 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC19.47■□□□□ 0.71
SPG11Q96JI7 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
SPG11Q96JI7 AC027612.3-201ENST00000413684 1047 ntBASIC19.47■□□□□ 0.71
SPG11Q96JI7 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC19.47■□□□□ 0.71
SPG11Q96JI7 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
SPG11Q96JI7 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SPG11Q96JI7 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SPG11Q96JI7 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SPG11Q96JI7 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SPG11Q96JI7 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SPG11Q96JI7 NME4-202ENST00000382940 766 ntTSL 3 BASIC19.46■□□□□ 0.71
SPG11Q96JI7 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
SPG11Q96JI7 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC19.46■□□□□ 0.71
SPG11Q96JI7 RAP2CP1-201ENST00000605103 478 ntBASIC19.46■□□□□ 0.71
SPG11Q96JI7 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC19.46■□□□□ 0.71
SPG11Q96JI7 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
SPG11Q96JI7 NME4-211ENST00000620944 1193 ntTSL 2 BASIC19.46■□□□□ 0.71
SPG11Q96JI7 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SPG11Q96JI7 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
SPG11Q96JI7 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC19.46■□□□□ 0.71
SPG11Q96JI7 ABHD17AP1-201ENST00000358206 933 ntBASIC19.46■□□□□ 0.71
SPG11Q96JI7 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
SPG11Q96JI7 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SPG11Q96JI7 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC19.45■□□□□ 0.7
SPG11Q96JI7 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
SPG11Q96JI7 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SPG11Q96JI7 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
SPG11Q96JI7 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SPG11Q96JI7 TERF1P2-201ENST00000583350 1212 ntBASIC19.45■□□□□ 0.7
SPG11Q96JI7 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.45■□□□□ 0.7
SPG11Q96JI7 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SPG11Q96JI7 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
SPG11Q96JI7 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC19.44■□□□□ 0.7
SPG11Q96JI7 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SPG11Q96JI7 GTSE1-AS1-202ENST00000623117 1518 ntBASIC19.44■□□□□ 0.7
SPG11Q96JI7 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SPG11Q96JI7 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC19.44■□□□□ 0.7
SPG11Q96JI7 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SPG11Q96JI7 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SPG11Q96JI7 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SPG11Q96JI7 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
SPG11Q96JI7 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SPG11Q96JI7 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC19.43■□□□□ 0.7
SPG11Q96JI7 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
SPG11Q96JI7 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
SPG11Q96JI7 MIR572-201ENST00000384983 95 ntBASIC19.43■□□□□ 0.7
SPG11Q96JI7 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
SPG11Q96JI7 CCDC92B-201ENST00000575506 885 ntBASIC19.43■□□□□ 0.7
SPG11Q96JI7 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SPG11Q96JI7 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
SPG11Q96JI7 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SPG11Q96JI7 TSPY26P-201ENST00000476365 1326 ntBASIC19.42■□□□□ 0.7
SPG11Q96JI7 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
SPG11Q96JI7 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC19.42■□□□□ 0.7
SPG11Q96JI7 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
SPG11Q96JI7 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SPG11Q96JI7 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
SPG11Q96JI7 VGF-203ENST00000611537 1622 ntTSL 5 BASIC19.41■□□□□ 0.7
SPG11Q96JI7 SLC6A10P-202ENST00000431994 2058 ntBASIC19.41■□□□□ 0.7
SPG11Q96JI7 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SPG11Q96JI7 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SPG11Q96JI7 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SPG11Q96JI7 NTF6G-201ENST00000591094 616 ntBASIC19.41■□□□□ 0.7
SPG11Q96JI7 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.41■□□□□ 0.7
SPG11Q96JI7 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SPG11Q96JI7 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SPG11Q96JI7 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SPG11Q96JI7 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SPG11Q96JI7 HLA-L-209ENST00000420110 1011 ntBASIC19.4■□□□□ 0.7
SPG11Q96JI7 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC19.4■□□□□ 0.7
SPG11Q96JI7 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SPG11Q96JI7 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
SPG11Q96JI7 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SPG11Q96JI7 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SPG11Q96JI7 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SPG11Q96JI7 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SPG11Q96JI7 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms