Protein–RNA interactions for Protein: Q96CG8

CTHRC1, Collagen triple helix repeat-containing protein 1, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1Q96CG8 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.24■□□□□ 0.99
CTHRC1Q96CG8 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.24■□□□□ 0.99
CTHRC1Q96CG8 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CTHRC1Q96CG8 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
CTHRC1Q96CG8 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTHRC1Q96CG8 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
CTHRC1Q96CG8 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC21.24■□□□□ 0.99
CTHRC1Q96CG8 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTHRC1Q96CG8 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CTHRC1Q96CG8 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.24■□□□□ 0.99
CTHRC1Q96CG8 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTHRC1Q96CG8 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC21.24■□□□□ 0.99
CTHRC1Q96CG8 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTHRC1Q96CG8 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CTHRC1Q96CG8 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTHRC1Q96CG8 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CTHRC1Q96CG8 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CTHRC1Q96CG8 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CTHRC1Q96CG8 GUSBP5-201ENST00000418136 578 ntBASIC21.23■□□□□ 0.99
CTHRC1Q96CG8 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CTHRC1Q96CG8 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC21.23■□□□□ 0.99
CTHRC1Q96CG8 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CTHRC1Q96CG8 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC21.23■□□□□ 0.99
CTHRC1Q96CG8 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
CTHRC1Q96CG8 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CTHRC1Q96CG8 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CTHRC1Q96CG8 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC21.22■□□□□ 0.99
CTHRC1Q96CG8 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CTHRC1Q96CG8 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
CTHRC1Q96CG8 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.22■□□□□ 0.99
CTHRC1Q96CG8 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.22■□□□□ 0.99
CTHRC1Q96CG8 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.22■□□□□ 0.99
CTHRC1Q96CG8 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CTHRC1Q96CG8 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CTHRC1Q96CG8 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CTHRC1Q96CG8 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CTHRC1Q96CG8 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CTHRC1Q96CG8 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CTHRC1Q96CG8 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC21.21■□□□□ 0.99
CTHRC1Q96CG8 UNC93B8-201ENST00000511903 705 ntBASIC21.21■□□□□ 0.99
CTHRC1Q96CG8 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
CTHRC1Q96CG8 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC21.2■□□□□ 0.98
CTHRC1Q96CG8 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CTHRC1Q96CG8 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CTHRC1Q96CG8 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
CTHRC1Q96CG8 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.2■□□□□ 0.98
CTHRC1Q96CG8 MTDHP2-201ENST00000601468 714 ntBASIC21.2■□□□□ 0.98
CTHRC1Q96CG8 AC010997.5-201ENST00000609182 354 ntBASIC21.2■□□□□ 0.98
CTHRC1Q96CG8 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.2■□□□□ 0.98
CTHRC1Q96CG8 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC21.2■□□□□ 0.98
CTHRC1Q96CG8 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC21.2■□□□□ 0.98
CTHRC1Q96CG8 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
CTHRC1Q96CG8 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
CTHRC1Q96CG8 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CTHRC1Q96CG8 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CTHRC1Q96CG8 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.19■□□□□ 0.98
CTHRC1Q96CG8 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC21.19■□□□□ 0.98
CTHRC1Q96CG8 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.19■□□□□ 0.98
CTHRC1Q96CG8 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
CTHRC1Q96CG8 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CTHRC1Q96CG8 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
CTHRC1Q96CG8 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.19■□□□□ 0.98
CTHRC1Q96CG8 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.19■□□□□ 0.98
CTHRC1Q96CG8 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTHRC1Q96CG8 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
CTHRC1Q96CG8 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTHRC1Q96CG8 TSPY9P-201ENST00000440215 945 ntBASIC21.18■□□□□ 0.98
CTHRC1Q96CG8 TSPY11P-201ENST00000442607 1045 ntBASIC21.18■□□□□ 0.98
CTHRC1Q96CG8 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
CTHRC1Q96CG8 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTHRC1Q96CG8 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CTHRC1Q96CG8 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
CTHRC1Q96CG8 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC21.17■□□□□ 0.98
CTHRC1Q96CG8 LSM4-201ENST00000252816 986 ntTSL 2 BASIC21.17■□□□□ 0.98
CTHRC1Q96CG8 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTHRC1Q96CG8 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.17■□□□□ 0.98
CTHRC1Q96CG8 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
CTHRC1Q96CG8 AC005703.6-201ENST00000623265 1329 ntBASIC21.17■□□□□ 0.98
CTHRC1Q96CG8 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTHRC1Q96CG8 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTHRC1Q96CG8 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.17■□□□□ 0.98
CTHRC1Q96CG8 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTHRC1Q96CG8 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC21.17■□□□□ 0.98
CTHRC1Q96CG8 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC21.17■□□□□ 0.98
CTHRC1Q96CG8 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
CTHRC1Q96CG8 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
CTHRC1Q96CG8 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CTHRC1Q96CG8 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.16■□□□□ 0.98
CTHRC1Q96CG8 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CTHRC1Q96CG8 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CTHRC1Q96CG8 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CTHRC1Q96CG8 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.15■□□□□ 0.98
CTHRC1Q96CG8 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
CTHRC1Q96CG8 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CTHRC1Q96CG8 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CTHRC1Q96CG8 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC21.15■□□□□ 0.98
CTHRC1Q96CG8 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTHRC1Q96CG8 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.15■□□□□ 0.98
CTHRC1Q96CG8 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTHRC1Q96CG8 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms