Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
RTF1Q92541 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
RTF1Q92541 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
RTF1Q92541 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
RTF1Q92541 ALDH1A3-203ENST00000557963 1670 ntBASIC29.86■■■□□ 2.37
RTF1Q92541 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC29.86■■■□□ 2.37
RTF1Q92541 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC29.86■■■□□ 2.37
RTF1Q92541 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC29.86■■■□□ 2.37
RTF1Q92541 AC009102.2-201ENST00000606772 1639 ntBASIC29.85■■■□□ 2.37
RTF1Q92541 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
RTF1Q92541 UNC93B3-201ENST00000308076 687 ntBASIC29.85■■■□□ 2.37
RTF1Q92541 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
RTF1Q92541 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
RTF1Q92541 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC29.85■■■□□ 2.37
RTF1Q92541 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC29.85■■■□□ 2.37
RTF1Q92541 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
RTF1Q92541 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC29.84■■■□□ 2.37
RTF1Q92541 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
RTF1Q92541 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
RTF1Q92541 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
RTF1Q92541 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC29.84■■■□□ 2.37
RTF1Q92541 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
RTF1Q92541 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
RTF1Q92541 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
RTF1Q92541 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
RTF1Q92541 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC29.83■■■□□ 2.37
RTF1Q92541 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC29.83■■■□□ 2.37
RTF1Q92541 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC29.83■■■□□ 2.37
RTF1Q92541 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC29.83■■■□□ 2.37
RTF1Q92541 PBX2P1-201ENST00000493219 1291 ntBASIC29.83■■■□□ 2.37
RTF1Q92541 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC29.82■■■□□ 2.37
RTF1Q92541 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
RTF1Q92541 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
RTF1Q92541 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC29.81■■■□□ 2.36
RTF1Q92541 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC29.81■■■□□ 2.36
RTF1Q92541 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC29.81■■■□□ 2.36
RTF1Q92541 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
RTF1Q92541 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
RTF1Q92541 AC133561.4-201ENST00000566112 224 ntBASIC29.81■■■□□ 2.36
RTF1Q92541 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
RTF1Q92541 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC29.81■■■□□ 2.36
RTF1Q92541 USF2-207ENST00000595068 1612 ntTSL 5 BASIC29.81■■■□□ 2.36
RTF1Q92541 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
RTF1Q92541 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC29.8■■■□□ 2.36
RTF1Q92541 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
RTF1Q92541 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC29.8■■■□□ 2.36
RTF1Q92541 AL136162.1-201ENST00000607711 1078 ntBASIC29.8■■■□□ 2.36
RTF1Q92541 AC005837.3-201ENST00000612163 286 ntBASIC29.8■■■□□ 2.36
RTF1Q92541 AC106739.1-201ENST00000617035 715 ntBASIC29.8■■■□□ 2.36
RTF1Q92541 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC29.8■■■□□ 2.36
RTF1Q92541 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
RTF1Q92541 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC29.79■■■□□ 2.36
RTF1Q92541 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC29.79■■■□□ 2.36
RTF1Q92541 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC29.79■■■□□ 2.36
RTF1Q92541 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC29.79■■■□□ 2.36
RTF1Q92541 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC29.79■■■□□ 2.36
RTF1Q92541 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC29.79■■■□□ 2.36
RTF1Q92541 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC29.79■■■□□ 2.36
RTF1Q92541 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
RTF1Q92541 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC29.79■■■□□ 2.36
RTF1Q92541 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
RTF1Q92541 EI24-204ENST00000527235 1625 ntTSL 5 BASIC29.78■■■□□ 2.36
RTF1Q92541 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
RTF1Q92541 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC29.78■■■□□ 2.36
RTF1Q92541 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
RTF1Q92541 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC29.78■■■□□ 2.36
RTF1Q92541 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC29.78■■■□□ 2.36
RTF1Q92541 DUX4L19-201ENST00000557448 1267 ntBASIC29.78■■■□□ 2.36
RTF1Q92541 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC29.78■■■□□ 2.36
RTF1Q92541 AC092171.4-201ENST00000609130 632 ntBASIC29.78■■■□□ 2.36
RTF1Q92541 EED-207ENST00000528180 1745 ntTSL 5 BASIC29.78■■■□□ 2.36
RTF1Q92541 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
RTF1Q92541 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
RTF1Q92541 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC29.77■■■□□ 2.36
RTF1Q92541 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC29.77■■■□□ 2.36
RTF1Q92541 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
RTF1Q92541 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
RTF1Q92541 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC29.76■■■□□ 2.36
RTF1Q92541 AC135279.3-201ENST00000610945 1311 ntBASIC29.76■■■□□ 2.36
RTF1Q92541 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC29.76■■■□□ 2.36
RTF1Q92541 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.36
RTF1Q92541 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC29.76■■■□□ 2.35
RTF1Q92541 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC29.76■■■□□ 2.35
RTF1Q92541 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC29.76■■■□□ 2.35
RTF1Q92541 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
RTF1Q92541 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
RTF1Q92541 AC099791.2-201ENST00000605725 427 ntBASIC29.75■■■□□ 2.35
RTF1Q92541 C17orf82-201ENST00000623772 1530 ntBASIC29.75■■■□□ 2.35
RTF1Q92541 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
RTF1Q92541 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC29.74■■■□□ 2.35
RTF1Q92541 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
RTF1Q92541 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
RTF1Q92541 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC29.74■■■□□ 2.35
RTF1Q92541 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC29.74■■■□□ 2.35
RTF1Q92541 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC29.74■■■□□ 2.35
RTF1Q92541 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC29.74■■■□□ 2.35
RTF1Q92541 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC29.74■■■□□ 2.35
RTF1Q92541 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
RTF1Q92541 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC29.74■■■□□ 2.35
RTF1Q92541 SYT6-210ENST00000641643 1587 ntBASIC29.73■■■□□ 2.35
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms