Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
USHBP1Q8N6Y0 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC30.34■■■□□ 2.45
USHBP1Q8N6Y0 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC30.34■■■□□ 2.45
USHBP1Q8N6Y0 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC30.34■■■□□ 2.45
USHBP1Q8N6Y0 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
USHBP1Q8N6Y0 AC099791.1-201ENST00000416440 715 ntBASIC30.34■■■□□ 2.45
USHBP1Q8N6Y0 AC087623.3-201ENST00000607047 1098 ntBASIC30.34■■■□□ 2.45
USHBP1Q8N6Y0 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
USHBP1Q8N6Y0 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC30.33■■■□□ 2.45
USHBP1Q8N6Y0 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC30.33■■■□□ 2.45
USHBP1Q8N6Y0 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
USHBP1Q8N6Y0 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
USHBP1Q8N6Y0 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
USHBP1Q8N6Y0 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC30.33■■■□□ 2.45
USHBP1Q8N6Y0 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
USHBP1Q8N6Y0 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC30.33■■■□□ 2.45
USHBP1Q8N6Y0 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC30.33■■■□□ 2.45
USHBP1Q8N6Y0 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
USHBP1Q8N6Y0 AC027682.1-201ENST00000562846 899 ntBASIC30.33■■■□□ 2.45
USHBP1Q8N6Y0 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC30.33■■■□□ 2.45
USHBP1Q8N6Y0 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC30.33■■■□□ 2.45
USHBP1Q8N6Y0 ANKRD20A6P-201ENST00000618763 204 ntBASIC30.33■■■□□ 2.45
USHBP1Q8N6Y0 NKILA-201ENST00000613231 537 ntTSL 4 BASIC30.32■■■□□ 2.44
USHBP1Q8N6Y0 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
USHBP1Q8N6Y0 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
USHBP1Q8N6Y0 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC30.32■■■□□ 2.44
USHBP1Q8N6Y0 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC30.32■■■□□ 2.44
USHBP1Q8N6Y0 USF2-207ENST00000595068 1612 ntTSL 5 BASIC30.32■■■□□ 2.44
USHBP1Q8N6Y0 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC30.32■■■□□ 2.44
USHBP1Q8N6Y0 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC30.31■■■□□ 2.44
USHBP1Q8N6Y0 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
USHBP1Q8N6Y0 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
USHBP1Q8N6Y0 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC30.31■■■□□ 2.44
USHBP1Q8N6Y0 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC30.31■■■□□ 2.44
USHBP1Q8N6Y0 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
USHBP1Q8N6Y0 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
USHBP1Q8N6Y0 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC30.3■■■□□ 2.44
USHBP1Q8N6Y0 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
USHBP1Q8N6Y0 HES6-206ENST00000409574 738 ntTSL 2 BASIC30.3■■■□□ 2.44
USHBP1Q8N6Y0 AC104564.3-201ENST00000582367 638 ntBASIC30.3■■■□□ 2.44
USHBP1Q8N6Y0 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC30.3■■■□□ 2.44
USHBP1Q8N6Y0 MIR6821-201ENST00000617625 74 ntBASIC30.3■■■□□ 2.44
USHBP1Q8N6Y0 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC30.3■■■□□ 2.44
USHBP1Q8N6Y0 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC30.29■■■□□ 2.44
USHBP1Q8N6Y0 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC30.29■■■□□ 2.44
USHBP1Q8N6Y0 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC30.29■■■□□ 2.44
USHBP1Q8N6Y0 AL138724.1-201ENST00000606771 1088 ntBASIC30.29■■■□□ 2.44
USHBP1Q8N6Y0 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
USHBP1Q8N6Y0 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
USHBP1Q8N6Y0 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC30.28■■■□□ 2.44
USHBP1Q8N6Y0 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC30.28■■■□□ 2.44
USHBP1Q8N6Y0 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC30.28■■■□□ 2.44
USHBP1Q8N6Y0 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC30.28■■■□□ 2.44
USHBP1Q8N6Y0 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
USHBP1Q8N6Y0 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC30.28■■■□□ 2.44
USHBP1Q8N6Y0 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC30.28■■■□□ 2.44
USHBP1Q8N6Y0 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
USHBP1Q8N6Y0 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
USHBP1Q8N6Y0 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC30.27■■■□□ 2.44
USHBP1Q8N6Y0 MIR3181-201ENST00000578512 73 ntBASIC30.27■■■□□ 2.44
USHBP1Q8N6Y0 AC136469.2-201ENST00000623944 1028 ntBASIC30.27■■■□□ 2.44
USHBP1Q8N6Y0 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
USHBP1Q8N6Y0 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
USHBP1Q8N6Y0 CD37-213ENST00000598095 1598 ntTSL 2 BASIC30.27■■■□□ 2.44
USHBP1Q8N6Y0 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
USHBP1Q8N6Y0 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC30.26■■■□□ 2.44
USHBP1Q8N6Y0 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC30.26■■■□□ 2.44
USHBP1Q8N6Y0 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC30.26■■■□□ 2.44
USHBP1Q8N6Y0 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC30.26■■■□□ 2.43
USHBP1Q8N6Y0 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
USHBP1Q8N6Y0 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC30.26■■■□□ 2.43
USHBP1Q8N6Y0 AC097381.1-201ENST00000429019 1296 ntBASIC30.26■■■□□ 2.43
USHBP1Q8N6Y0 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC30.26■■■□□ 2.43
USHBP1Q8N6Y0 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC30.26■■■□□ 2.43
USHBP1Q8N6Y0 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC30.26■■■□□ 2.43
USHBP1Q8N6Y0 AC009086.3-201ENST00000623486 1008 ntBASIC30.26■■■□□ 2.43
USHBP1Q8N6Y0 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC30.26■■■□□ 2.43
USHBP1Q8N6Y0 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC30.26■■■□□ 2.43
USHBP1Q8N6Y0 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC30.25■■■□□ 2.43
USHBP1Q8N6Y0 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
USHBP1Q8N6Y0 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
USHBP1Q8N6Y0 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC30.25■■■□□ 2.43
USHBP1Q8N6Y0 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
USHBP1Q8N6Y0 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
USHBP1Q8N6Y0 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC30.25■■■□□ 2.43
USHBP1Q8N6Y0 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
USHBP1Q8N6Y0 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
USHBP1Q8N6Y0 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC30.24■■■□□ 2.43
USHBP1Q8N6Y0 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC30.24■■■□□ 2.43
USHBP1Q8N6Y0 RHOF-204ENST00000537265 699 ntTSL 2 BASIC30.24■■■□□ 2.43
USHBP1Q8N6Y0 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC30.24■■■□□ 2.43
USHBP1Q8N6Y0 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC30.24■■■□□ 2.43
USHBP1Q8N6Y0 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
USHBP1Q8N6Y0 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC30.24■■■□□ 2.43
USHBP1Q8N6Y0 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
USHBP1Q8N6Y0 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC30.23■■■□□ 2.43
USHBP1Q8N6Y0 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC30.23■■■□□ 2.43
USHBP1Q8N6Y0 PLD4-205ENST00000553861 667 ntTSL 2 BASIC30.23■■■□□ 2.43
USHBP1Q8N6Y0 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC30.23■■■□□ 2.43
USHBP1Q8N6Y0 AC241377.3-202ENST00000626088 1088 ntBASIC30.23■■■□□ 2.43
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms