Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC24.62■■□□□ 1.53
VPS52Q8N1B4 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC24.62■■□□□ 1.53
VPS52Q8N1B4 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
VPS52Q8N1B4 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
VPS52Q8N1B4 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC24.61■■□□□ 1.53
VPS52Q8N1B4 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
VPS52Q8N1B4 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
VPS52Q8N1B4 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
VPS52Q8N1B4 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC24.61■■□□□ 1.53
VPS52Q8N1B4 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
VPS52Q8N1B4 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC24.61■■□□□ 1.53
VPS52Q8N1B4 GRAMD4P4-201ENST00000613563 1115 ntBASIC24.61■■□□□ 1.53
VPS52Q8N1B4 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC24.61■■□□□ 1.53
VPS52Q8N1B4 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
VPS52Q8N1B4 AC131274.2-201ENST00000580697 1507 ntBASIC24.61■■□□□ 1.53
VPS52Q8N1B4 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC24.6■■□□□ 1.53
VPS52Q8N1B4 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC24.6■■□□□ 1.53
VPS52Q8N1B4 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC24.6■■□□□ 1.53
VPS52Q8N1B4 AL136967.2-201ENST00000623968 743 ntBASIC24.6■■□□□ 1.53
VPS52Q8N1B4 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
VPS52Q8N1B4 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
VPS52Q8N1B4 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC24.6■■□□□ 1.53
VPS52Q8N1B4 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
VPS52Q8N1B4 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
VPS52Q8N1B4 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
VPS52Q8N1B4 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC24.59■■□□□ 1.53
VPS52Q8N1B4 AC026271.2-201ENST00000428091 497 ntBASIC24.59■■□□□ 1.53
VPS52Q8N1B4 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
VPS52Q8N1B4 AF213884.3-201ENST00000563833 479 ntBASIC24.59■■□□□ 1.53
VPS52Q8N1B4 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC24.59■■□□□ 1.53
VPS52Q8N1B4 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC24.59■■□□□ 1.53
VPS52Q8N1B4 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
VPS52Q8N1B4 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
VPS52Q8N1B4 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC24.59■■□□□ 1.53
VPS52Q8N1B4 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
VPS52Q8N1B4 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.53
VPS52Q8N1B4 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.53
VPS52Q8N1B4 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC24.58■■□□□ 1.53
VPS52Q8N1B4 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC24.58■■□□□ 1.53
VPS52Q8N1B4 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC24.58■■□□□ 1.53
VPS52Q8N1B4 SF1-220ENST00000626028 704 ntTSL 2 BASIC24.58■■□□□ 1.53
VPS52Q8N1B4 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
VPS52Q8N1B4 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC24.58■■□□□ 1.53
VPS52Q8N1B4 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC24.58■■□□□ 1.53
VPS52Q8N1B4 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
VPS52Q8N1B4 SYT6-210ENST00000641643 1587 ntBASIC24.58■■□□□ 1.52
VPS52Q8N1B4 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC24.58■■□□□ 1.52
VPS52Q8N1B4 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC24.57■■□□□ 1.52
VPS52Q8N1B4 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
VPS52Q8N1B4 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
VPS52Q8N1B4 AC105265.2-201ENST00000467189 838 ntBASIC24.57■■□□□ 1.52
VPS52Q8N1B4 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC24.57■■□□□ 1.52
VPS52Q8N1B4 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
VPS52Q8N1B4 SLC6A10P-202ENST00000431994 2058 ntBASIC24.57■■□□□ 1.52
VPS52Q8N1B4 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC24.56■■□□□ 1.52
VPS52Q8N1B4 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
VPS52Q8N1B4 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC24.56■■□□□ 1.52
VPS52Q8N1B4 STK32C-205ENST00000456004 607 ntTSL 2 BASIC24.56■■□□□ 1.52
VPS52Q8N1B4 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC24.56■■□□□ 1.52
VPS52Q8N1B4 AC092171.4-201ENST00000609130 632 ntBASIC24.56■■□□□ 1.52
VPS52Q8N1B4 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
VPS52Q8N1B4 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
VPS52Q8N1B4 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC24.56■■□□□ 1.52
VPS52Q8N1B4 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC24.56■■□□□ 1.52
VPS52Q8N1B4 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
VPS52Q8N1B4 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC24.55■■□□□ 1.52
VPS52Q8N1B4 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
VPS52Q8N1B4 MIR939-201ENST00000401314 82 ntBASIC24.55■■□□□ 1.52
VPS52Q8N1B4 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
VPS52Q8N1B4 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC24.55■■□□□ 1.52
VPS52Q8N1B4 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC24.55■■□□□ 1.52
VPS52Q8N1B4 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC24.55■■□□□ 1.52
VPS52Q8N1B4 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
VPS52Q8N1B4 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
VPS52Q8N1B4 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
VPS52Q8N1B4 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
VPS52Q8N1B4 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
VPS52Q8N1B4 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
VPS52Q8N1B4 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC24.54■■□□□ 1.52
VPS52Q8N1B4 AP001330.3-201ENST00000520123 633 ntBASIC24.54■■□□□ 1.52
VPS52Q8N1B4 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC24.54■■□□□ 1.52
VPS52Q8N1B4 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC24.54■■□□□ 1.52
VPS52Q8N1B4 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
VPS52Q8N1B4 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
VPS52Q8N1B4 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC24.54■■□□□ 1.52
VPS52Q8N1B4 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
VPS52Q8N1B4 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC24.53■■□□□ 1.52
VPS52Q8N1B4 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC24.53■■□□□ 1.52
VPS52Q8N1B4 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
VPS52Q8N1B4 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC24.53■■□□□ 1.52
VPS52Q8N1B4 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC24.53■■□□□ 1.52
VPS52Q8N1B4 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC24.53■■□□□ 1.52
VPS52Q8N1B4 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC24.53■■□□□ 1.52
VPS52Q8N1B4 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC24.53■■□□□ 1.52
VPS52Q8N1B4 AC092666.2-201ENST00000613287 246 ntBASIC24.53■■□□□ 1.52
VPS52Q8N1B4 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC24.53■■□□□ 1.52
VPS52Q8N1B4 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
VPS52Q8N1B4 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC24.52■■□□□ 1.52
VPS52Q8N1B4 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC24.52■■□□□ 1.52
VPS52Q8N1B4 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms