Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CSPG4Q6UVK1 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
CSPG4Q6UVK1 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CSPG4Q6UVK1 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CSPG4Q6UVK1 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
CSPG4Q6UVK1 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC18.91■□□□□ 0.62
CSPG4Q6UVK1 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CSPG4Q6UVK1 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CSPG4Q6UVK1 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CSPG4Q6UVK1 AC010501.1-201ENST00000606270 1962 ntBASIC18.9■□□□□ 0.62
CSPG4Q6UVK1 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CSPG4Q6UVK1 RAB43-208ENST00000615093 783 ntTSL 5 BASIC18.9■□□□□ 0.62
CSPG4Q6UVK1 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CSPG4Q6UVK1 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
CSPG4Q6UVK1 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CSPG4Q6UVK1 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
CSPG4Q6UVK1 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CSPG4Q6UVK1 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
CSPG4Q6UVK1 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC18.89■□□□□ 0.61
CSPG4Q6UVK1 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CSPG4Q6UVK1 SNX3-202ENST00000349379 890 ntTSL 2 BASIC18.89■□□□□ 0.61
CSPG4Q6UVK1 GRAMD4P2-201ENST00000423297 1097 ntBASIC18.89■□□□□ 0.61
CSPG4Q6UVK1 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CSPG4Q6UVK1 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC18.89■□□□□ 0.61
CSPG4Q6UVK1 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC18.89■□□□□ 0.61
CSPG4Q6UVK1 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CSPG4Q6UVK1 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC18.89■□□□□ 0.61
CSPG4Q6UVK1 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
CSPG4Q6UVK1 HES6-206ENST00000409574 738 ntTSL 2 BASIC18.89■□□□□ 0.61
CSPG4Q6UVK1 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC18.89■□□□□ 0.61
CSPG4Q6UVK1 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CSPG4Q6UVK1 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC18.89■□□□□ 0.61
CSPG4Q6UVK1 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CSPG4Q6UVK1 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC18.89■□□□□ 0.61
CSPG4Q6UVK1 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
CSPG4Q6UVK1 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CSPG4Q6UVK1 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CSPG4Q6UVK1 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC18.88■□□□□ 0.61
CSPG4Q6UVK1 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC18.88■□□□□ 0.61
CSPG4Q6UVK1 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC18.88■□□□□ 0.61
CSPG4Q6UVK1 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC18.88■□□□□ 0.61
CSPG4Q6UVK1 AC241377.3-202ENST00000626088 1088 ntBASIC18.88■□□□□ 0.61
CSPG4Q6UVK1 AC241585.3-202ENST00000628937 1088 ntBASIC18.88■□□□□ 0.61
CSPG4Q6UVK1 AC245100.8-202ENST00000629247 1058 ntBASIC18.88■□□□□ 0.61
CSPG4Q6UVK1 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC18.87■□□□□ 0.61
CSPG4Q6UVK1 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CSPG4Q6UVK1 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CSPG4Q6UVK1 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CSPG4Q6UVK1 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CSPG4Q6UVK1 AC004911.1-201ENST00000416316 871 ntBASIC18.87■□□□□ 0.61
CSPG4Q6UVK1 MIR3181-201ENST00000578512 73 ntBASIC18.87■□□□□ 0.61
CSPG4Q6UVK1 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CSPG4Q6UVK1 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC18.87■□□□□ 0.61
CSPG4Q6UVK1 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CSPG4Q6UVK1 AL358852.1-201ENST00000623174 1268 ntBASIC18.86■□□□□ 0.61
CSPG4Q6UVK1 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CSPG4Q6UVK1 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CSPG4Q6UVK1 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CSPG4Q6UVK1 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC18.86■□□□□ 0.61
CSPG4Q6UVK1 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
CSPG4Q6UVK1 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
CSPG4Q6UVK1 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CSPG4Q6UVK1 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
CSPG4Q6UVK1 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CSPG4Q6UVK1 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CSPG4Q6UVK1 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CSPG4Q6UVK1 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
CSPG4Q6UVK1 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CSPG4Q6UVK1 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CSPG4Q6UVK1 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CSPG4Q6UVK1 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC18.85■□□□□ 0.61
CSPG4Q6UVK1 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CSPG4Q6UVK1 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CSPG4Q6UVK1 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CSPG4Q6UVK1 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CSPG4Q6UVK1 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CSPG4Q6UVK1 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
CSPG4Q6UVK1 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC18.85■□□□□ 0.61
CSPG4Q6UVK1 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC18.85■□□□□ 0.61
CSPG4Q6UVK1 TK2-208ENST00000545043 1120 ntTSL 2 BASIC18.85■□□□□ 0.61
CSPG4Q6UVK1 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CSPG4Q6UVK1 SLC6A10P-202ENST00000431994 2058 ntBASIC18.84■□□□□ 0.61
CSPG4Q6UVK1 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CSPG4Q6UVK1 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
CSPG4Q6UVK1 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CSPG4Q6UVK1 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
CSPG4Q6UVK1 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC18.84■□□□□ 0.61
CSPG4Q6UVK1 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC18.84■□□□□ 0.61
CSPG4Q6UVK1 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
CSPG4Q6UVK1 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC18.83■□□□□ 0.61
CSPG4Q6UVK1 AC131274.2-201ENST00000580697 1507 ntBASIC18.83■□□□□ 0.6
CSPG4Q6UVK1 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CSPG4Q6UVK1 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC18.83■□□□□ 0.6
CSPG4Q6UVK1 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
CSPG4Q6UVK1 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC18.83■□□□□ 0.6
CSPG4Q6UVK1 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CSPG4Q6UVK1 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CSPG4Q6UVK1 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CSPG4Q6UVK1 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC18.82■□□□□ 0.6
CSPG4Q6UVK1 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms