Protein–RNA interactions for Protein: Q6P087

RPUSD3, Mitochondrial mRNA pseudouridine synthase RPUSD3, humanhuman

Known RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD3Q6P087 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.84■□□□□ 0.93
RPUSD3Q6P087 MIR5787-201ENST00000611784 55 ntBASIC20.84■□□□□ 0.93
RPUSD3Q6P087 AC011298.3-201ENST00000615796 283 ntBASIC20.84■□□□□ 0.93
RPUSD3Q6P087 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC20.84■□□□□ 0.93
RPUSD3Q6P087 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
RPUSD3Q6P087 SLC6A10P-202ENST00000431994 2058 ntBASIC20.83■□□□□ 0.93
RPUSD3Q6P087 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
RPUSD3Q6P087 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
RPUSD3Q6P087 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.83■□□□□ 0.93
RPUSD3Q6P087 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
RPUSD3Q6P087 RASA4CP-201ENST00000424092 1398 ntBASIC20.83■□□□□ 0.92
RPUSD3Q6P087 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC20.83■□□□□ 0.92
RPUSD3Q6P087 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RPUSD3Q6P087 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RPUSD3Q6P087 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RPUSD3Q6P087 SERBP1P1-201ENST00000396021 1160 ntBASIC20.82■□□□□ 0.92
RPUSD3Q6P087 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.82■□□□□ 0.92
RPUSD3Q6P087 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RPUSD3Q6P087 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.82■□□□□ 0.92
RPUSD3Q6P087 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RPUSD3Q6P087 MIR4767-201ENST00000582827 78 ntBASIC20.82■□□□□ 0.92
RPUSD3Q6P087 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RPUSD3Q6P087 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
RPUSD3Q6P087 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RPUSD3Q6P087 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
RPUSD3Q6P087 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RPUSD3Q6P087 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
RPUSD3Q6P087 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
RPUSD3Q6P087 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC20.81■□□□□ 0.92
RPUSD3Q6P087 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
RPUSD3Q6P087 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC20.81■□□□□ 0.92
RPUSD3Q6P087 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.81■□□□□ 0.92
RPUSD3Q6P087 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
RPUSD3Q6P087 AC099791.2-201ENST00000605725 427 ntBASIC20.81■□□□□ 0.92
RPUSD3Q6P087 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RPUSD3Q6P087 AC241377.3-202ENST00000626088 1088 ntBASIC20.81■□□□□ 0.92
RPUSD3Q6P087 AC241585.3-202ENST00000628937 1088 ntBASIC20.81■□□□□ 0.92
RPUSD3Q6P087 AC245100.8-202ENST00000629247 1058 ntBASIC20.81■□□□□ 0.92
RPUSD3Q6P087 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC20.81■□□□□ 0.92
RPUSD3Q6P087 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RPUSD3Q6P087 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC20.81■□□□□ 0.92
RPUSD3Q6P087 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
RPUSD3Q6P087 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC20.8■□□□□ 0.92
RPUSD3Q6P087 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
RPUSD3Q6P087 AC009102.2-201ENST00000606772 1639 ntBASIC20.8■□□□□ 0.92
RPUSD3Q6P087 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RPUSD3Q6P087 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC20.8■□□□□ 0.92
RPUSD3Q6P087 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
RPUSD3Q6P087 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.8■□□□□ 0.92
RPUSD3Q6P087 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RPUSD3Q6P087 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
RPUSD3Q6P087 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC20.8■□□□□ 0.92
RPUSD3Q6P087 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
RPUSD3Q6P087 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
RPUSD3Q6P087 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.79■□□□□ 0.92
RPUSD3Q6P087 AC027682.1-201ENST00000562846 899 ntBASIC20.79■□□□□ 0.92
RPUSD3Q6P087 AC092666.2-201ENST00000613287 246 ntBASIC20.79■□□□□ 0.92
RPUSD3Q6P087 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
RPUSD3Q6P087 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
RPUSD3Q6P087 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
RPUSD3Q6P087 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
RPUSD3Q6P087 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
RPUSD3Q6P087 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RPUSD3Q6P087 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
RPUSD3Q6P087 CA15P2-201ENST00000611168 834 ntBASIC20.78■□□□□ 0.92
RPUSD3Q6P087 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
RPUSD3Q6P087 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
RPUSD3Q6P087 AL161729.1-201ENST00000604104 1402 ntBASIC20.78■□□□□ 0.92
RPUSD3Q6P087 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
RPUSD3Q6P087 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
RPUSD3Q6P087 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.77■□□□□ 0.92
RPUSD3Q6P087 AC104564.3-201ENST00000582367 638 ntBASIC20.77■□□□□ 0.92
RPUSD3Q6P087 MIR6821-201ENST00000617625 74 ntBASIC20.77■□□□□ 0.92
RPUSD3Q6P087 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC20.77■□□□□ 0.92
RPUSD3Q6P087 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC20.77■□□□□ 0.92
RPUSD3Q6P087 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC20.77■□□□□ 0.92
RPUSD3Q6P087 C17orf82-201ENST00000623772 1530 ntBASIC20.77■□□□□ 0.92
RPUSD3Q6P087 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
RPUSD3Q6P087 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RPUSD3Q6P087 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC20.76■□□□□ 0.91
RPUSD3Q6P087 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.76■□□□□ 0.91
RPUSD3Q6P087 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.76■□□□□ 0.91
RPUSD3Q6P087 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.76■□□□□ 0.91
RPUSD3Q6P087 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC20.76■□□□□ 0.91
RPUSD3Q6P087 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RPUSD3Q6P087 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.75■□□□□ 0.91
RPUSD3Q6P087 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC20.75■□□□□ 0.91
RPUSD3Q6P087 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC20.75■□□□□ 0.91
RPUSD3Q6P087 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC20.75■□□□□ 0.91
RPUSD3Q6P087 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RPUSD3Q6P087 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
RPUSD3Q6P087 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC20.75■□□□□ 0.91
RPUSD3Q6P087 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RPUSD3Q6P087 LSR-205ENST00000427250 1606 ntTSL 2 BASIC20.75■□□□□ 0.91
RPUSD3Q6P087 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
RPUSD3Q6P087 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
RPUSD3Q6P087 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.74■□□□□ 0.91
RPUSD3Q6P087 AC097381.1-201ENST00000429019 1296 ntBASIC20.74■□□□□ 0.91
RPUSD3Q6P087 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
RPUSD3Q6P087 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms