Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
SHROOM1Q2M3G4 CD37-213ENST00000598095 1598 ntTSL 2 BASIC26.85■■□□□ 1.89
SHROOM1Q2M3G4 SYT6-210ENST00000641643 1587 ntBASIC26.85■■□□□ 1.89
SHROOM1Q2M3G4 MIR939-201ENST00000401314 82 ntBASIC26.85■■□□□ 1.89
SHROOM1Q2M3G4 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
SHROOM1Q2M3G4 MAG-206ENST00000597035 542 ntTSL 4 BASIC26.85■■□□□ 1.89
SHROOM1Q2M3G4 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
SHROOM1Q2M3G4 TMEM202-AS1-202ENST00000565181 2325 ntBASIC26.85■■□□□ 1.89
SHROOM1Q2M3G4 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC26.85■■□□□ 1.89
SHROOM1Q2M3G4 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
SHROOM1Q2M3G4 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC26.85■■□□□ 1.89
SHROOM1Q2M3G4 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
SHROOM1Q2M3G4 C17orf82-201ENST00000623772 1530 ntBASIC26.85■■□□□ 1.89
SHROOM1Q2M3G4 USF2-207ENST00000595068 1612 ntTSL 5 BASIC26.84■■□□□ 1.89
SHROOM1Q2M3G4 PTCHD3P2-201ENST00000424937 1205 ntBASIC26.84■■□□□ 1.89
SHROOM1Q2M3G4 AC026271.2-201ENST00000428091 497 ntBASIC26.84■■□□□ 1.89
SHROOM1Q2M3G4 AC105265.2-201ENST00000467189 838 ntBASIC26.84■■□□□ 1.89
SHROOM1Q2M3G4 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC26.84■■□□□ 1.89
SHROOM1Q2M3G4 RARRES2P6-201ENST00000567333 442 ntBASIC26.84■■□□□ 1.89
SHROOM1Q2M3G4 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC26.84■■□□□ 1.89
SHROOM1Q2M3G4 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC26.84■■□□□ 1.89
SHROOM1Q2M3G4 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC26.84■■□□□ 1.89
SHROOM1Q2M3G4 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
SHROOM1Q2M3G4 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
SHROOM1Q2M3G4 PTMA-205ENST00000410064 814 ntTSL 2 BASIC26.83■■□□□ 1.89
SHROOM1Q2M3G4 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC26.83■■□□□ 1.89
SHROOM1Q2M3G4 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC26.83■■□□□ 1.89
SHROOM1Q2M3G4 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC26.83■■□□□ 1.88
SHROOM1Q2M3G4 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC26.82■■□□□ 1.88
SHROOM1Q2M3G4 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC26.82■■□□□ 1.88
SHROOM1Q2M3G4 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC26.82■■□□□ 1.88
SHROOM1Q2M3G4 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC26.82■■□□□ 1.88
SHROOM1Q2M3G4 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC26.82■■□□□ 1.88
SHROOM1Q2M3G4 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC26.82■■□□□ 1.88
SHROOM1Q2M3G4 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC26.81■■□□□ 1.88
SHROOM1Q2M3G4 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
SHROOM1Q2M3G4 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC26.81■■□□□ 1.88
SHROOM1Q2M3G4 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
SHROOM1Q2M3G4 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
SHROOM1Q2M3G4 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
SHROOM1Q2M3G4 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
SHROOM1Q2M3G4 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC26.81■■□□□ 1.88
SHROOM1Q2M3G4 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC26.8■■□□□ 1.88
SHROOM1Q2M3G4 LGR4-203ENST00000480977 492 ntTSL 2 BASIC26.8■■□□□ 1.88
SHROOM1Q2M3G4 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC26.8■■□□□ 1.88
SHROOM1Q2M3G4 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC26.8■■□□□ 1.88
SHROOM1Q2M3G4 SF1-220ENST00000626028 704 ntTSL 2 BASIC26.8■■□□□ 1.88
SHROOM1Q2M3G4 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
SHROOM1Q2M3G4 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC26.8■■□□□ 1.88
SHROOM1Q2M3G4 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC26.8■■□□□ 1.88
SHROOM1Q2M3G4 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
SHROOM1Q2M3G4 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
SHROOM1Q2M3G4 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
SHROOM1Q2M3G4 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC26.79■■□□□ 1.88
SHROOM1Q2M3G4 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
SHROOM1Q2M3G4 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
SHROOM1Q2M3G4 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC26.79■■□□□ 1.88
SHROOM1Q2M3G4 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC26.79■■□□□ 1.88
SHROOM1Q2M3G4 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
SHROOM1Q2M3G4 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC26.79■■□□□ 1.88
SHROOM1Q2M3G4 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC26.79■■□□□ 1.88
SHROOM1Q2M3G4 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC26.79■■□□□ 1.88
SHROOM1Q2M3G4 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
SHROOM1Q2M3G4 NKILA-201ENST00000613231 537 ntTSL 4 BASIC26.78■■□□□ 1.88
SHROOM1Q2M3G4 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC26.78■■□□□ 1.88
SHROOM1Q2M3G4 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
SHROOM1Q2M3G4 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
SHROOM1Q2M3G4 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
SHROOM1Q2M3G4 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC26.77■■□□□ 1.88
SHROOM1Q2M3G4 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
SHROOM1Q2M3G4 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC26.77■■□□□ 1.88
SHROOM1Q2M3G4 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
SHROOM1Q2M3G4 DUX4L19-201ENST00000557448 1267 ntBASIC26.77■■□□□ 1.88
SHROOM1Q2M3G4 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC26.77■■□□□ 1.88
SHROOM1Q2M3G4 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
SHROOM1Q2M3G4 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC26.76■■□□□ 1.87
SHROOM1Q2M3G4 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC26.76■■□□□ 1.87
SHROOM1Q2M3G4 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC26.76■■□□□ 1.87
SHROOM1Q2M3G4 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
SHROOM1Q2M3G4 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
SHROOM1Q2M3G4 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
SHROOM1Q2M3G4 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
SHROOM1Q2M3G4 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC26.76■■□□□ 1.87
SHROOM1Q2M3G4 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC26.76■■□□□ 1.87
SHROOM1Q2M3G4 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC26.75■■□□□ 1.87
SHROOM1Q2M3G4 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC26.75■■□□□ 1.87
SHROOM1Q2M3G4 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC26.75■■□□□ 1.87
SHROOM1Q2M3G4 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC26.75■■□□□ 1.87
SHROOM1Q2M3G4 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
SHROOM1Q2M3G4 AC138932.3-201ENST00000567634 1902 ntBASIC26.75■■□□□ 1.87
SHROOM1Q2M3G4 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC26.74■■□□□ 1.87
SHROOM1Q2M3G4 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC26.74■■□□□ 1.87
SHROOM1Q2M3G4 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC26.74■■□□□ 1.87
SHROOM1Q2M3G4 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC26.74■■□□□ 1.87
SHROOM1Q2M3G4 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
SHROOM1Q2M3G4 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC26.74■■□□□ 1.87
SHROOM1Q2M3G4 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
SHROOM1Q2M3G4 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
SHROOM1Q2M3G4 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC26.74■■□□□ 1.87
SHROOM1Q2M3G4 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC26.73■■□□□ 1.87
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms