Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC16.86■□□□□ 0.29
PRKDCP78527 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PRKDCP78527 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
PRKDCP78527 AC006970.2-201ENST00000450065 779 ntBASIC16.85■□□□□ 0.29
PRKDCP78527 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC16.85■□□□□ 0.29
PRKDCP78527 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PRKDCP78527 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
PRKDCP78527 NT5C3AP1-201ENST00000394500 1012 ntBASIC16.85■□□□□ 0.29
PRKDCP78527 HSCB-202ENST00000398941 955 ntTSL 2 BASIC16.85■□□□□ 0.29
PRKDCP78527 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PRKDCP78527 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
PRKDCP78527 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
PRKDCP78527 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
PRKDCP78527 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC16.85■□□□□ 0.29
PRKDCP78527 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
PRKDCP78527 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
PRKDCP78527 LINC01003-201ENST00000564834 1764 ntBASIC16.84■□□□□ 0.29
PRKDCP78527 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PRKDCP78527 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
PRKDCP78527 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
PRKDCP78527 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC16.84■□□□□ 0.29
PRKDCP78527 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
PRKDCP78527 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PRKDCP78527 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PRKDCP78527 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC16.84■□□□□ 0.29
PRKDCP78527 APTR-205ENST00000447009 902 ntTSL 2 BASIC16.84■□□□□ 0.29
PRKDCP78527 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC16.84■□□□□ 0.29
PRKDCP78527 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PRKDCP78527 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.29
PRKDCP78527 AC016769.1-201ENST00000409132 1010 ntBASIC16.83■□□□□ 0.29
PRKDCP78527 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.29
PRKDCP78527 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PRKDCP78527 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC16.83■□□□□ 0.28
PRKDCP78527 KLF13-207ENST00000560473 489 ntTSL 3 BASIC16.83■□□□□ 0.28
PRKDCP78527 AL138781.1-201ENST00000566567 1274 ntBASIC16.83■□□□□ 0.28
PRKDCP78527 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
PRKDCP78527 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PRKDCP78527 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PRKDCP78527 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PRKDCP78527 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC16.82■□□□□ 0.28
PRKDCP78527 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PRKDCP78527 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PRKDCP78527 WWOX-218ENST00000627394 894 ntTSL 5 BASIC16.82■□□□□ 0.28
PRKDCP78527 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC16.82■□□□□ 0.28
PRKDCP78527 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PRKDCP78527 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
PRKDCP78527 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PRKDCP78527 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC16.82■□□□□ 0.28
PRKDCP78527 GPX1P1-201ENST00000388829 606 ntBASIC16.81■□□□□ 0.28
PRKDCP78527 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC16.81■□□□□ 0.28
PRKDCP78527 IGHV3-19-201ENST00000521488 291 ntBASIC16.81■□□□□ 0.28
PRKDCP78527 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PRKDCP78527 MIR572-201ENST00000384983 95 ntBASIC16.81■□□□□ 0.28
PRKDCP78527 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC16.81■□□□□ 0.28
PRKDCP78527 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PRKDCP78527 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
PRKDCP78527 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC16.81■□□□□ 0.28
PRKDCP78527 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PRKDCP78527 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC16.8■□□□□ 0.28
PRKDCP78527 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC16.8■□□□□ 0.28
PRKDCP78527 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PRKDCP78527 AC098590.1-201ENST00000468126 897 ntBASIC16.8■□□□□ 0.28
PRKDCP78527 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC16.8■□□□□ 0.28
PRKDCP78527 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PRKDCP78527 DRD5P2-201ENST00000421395 2012 ntBASIC16.8■□□□□ 0.28
PRKDCP78527 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PRKDCP78527 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
PRKDCP78527 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PRKDCP78527 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC16.8■□□□□ 0.28
PRKDCP78527 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC16.79■□□□□ 0.28
PRKDCP78527 DBI-210ENST00000542275 757 ntTSL 5 BASIC16.79■□□□□ 0.28
PRKDCP78527 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC16.79■□□□□ 0.28
PRKDCP78527 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC16.79■□□□□ 0.28
PRKDCP78527 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC16.79■□□□□ 0.28
PRKDCP78527 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PRKDCP78527 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
PRKDCP78527 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PRKDCP78527 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PRKDCP78527 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PRKDCP78527 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC16.79■□□□□ 0.28
PRKDCP78527 AC069152.1-201ENST00000438030 544 ntBASIC16.79■□□□□ 0.28
PRKDCP78527 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PRKDCP78527 CBFB-203ENST00000561924 584 ntTSL 5 BASIC16.79■□□□□ 0.28
PRKDCP78527 AC092171.4-201ENST00000609130 632 ntBASIC16.79■□□□□ 0.28
PRKDCP78527 ABCB10P1-201ENST00000614297 2181 ntBASIC16.79■□□□□ 0.28
PRKDCP78527 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC16.78■□□□□ 0.28
PRKDCP78527 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PRKDCP78527 AC126544.1-201ENST00000580842 1059 ntBASIC16.78■□□□□ 0.28
PRKDCP78527 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC16.78■□□□□ 0.28
PRKDCP78527 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC16.78■□□□□ 0.28
PRKDCP78527 AC137761.2-201ENST00000561729 223 ntBASIC16.78■□□□□ 0.28
PRKDCP78527 AC145350.3-201ENST00000569033 163 ntBASIC16.78■□□□□ 0.28
PRKDCP78527 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PRKDCP78527 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC16.78■□□□□ 0.28
PRKDCP78527 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PRKDCP78527 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC16.78■□□□□ 0.28
PRKDCP78527 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC16.78■□□□□ 0.28
PRKDCP78527 AICDA-202ENST00000537228 667 ntTSL 5 BASIC16.78■□□□□ 0.28
PRKDCP78527 AL050303.2-201ENST00000619798 666 ntBASIC16.78■□□□□ 0.28
PRKDCP78527 PRORSD1P-201ENST00000295112 541 ntBASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms